Dear Vasudev,

You can run the module described in that wiki page, and in the output file [lr]h.hippoAmygLabels-T1.v2x.mgz you will find segmentations for CA1 head, CA1 body, CA23 head, CA23 body, CA4 head, CA4 body, and hippocampal tail (note that we don’t parcellate the tail).

Cheers,

/Eugenio

 

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

 

 

From: Dev vasu <vasudevamurthy.devulapally@gmail.com>
Date: Monday, 2 July 2018 at 17:09
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>, "iglesias@nmr.mgh.harvard.edu" <iglesias@nmr.mgh.harvard.edu>
Subject: Anterior / Posterior Partition in Hippocampus parcellation atlas

 

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Dear Sir,

 

 

I have reviewed your journal which detailed about hippocampus parcellation ( https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala ) of subfields ( HBT - Head/body/Tail) , could you please let me know how to partition the atlas along the lines of Anterior CA1,CA3,CA4  and posterior CA1,CA3,CA4.

 

 

Thanks

Vasdudev

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