Ender asked me to forward you this:
I had to automate freeview recently.
Freeview can be used via command line.
For options please write
freeview -h
in the console / terminal.
An example command that produces a surface and overlays a map on it:
freeview -f lh.inflated:overlay=L.mgz -cam azimuth 180
Let me know if this helps.
Cheers,
E
--
On Fri, 2013-05-31 at 08:35 -0400, Ruopeng Wang wrote:
> There is a screenshot option -ss from the command-line. Run 'freeview -h' will show you all the available options.
>
> Ruopeng
>
> On May 31, 2013, at 6:16 AM, Garikoitz Lerma-Usabiaga <garikoitz@gmail.com> wrote:
>
> > Hi list,
> > is it possible to automate Freeview automation from the command line?
> >
> > I want to automatically render 3D images of the hippocampus (I have a separate volume, based on hippo-subfields) and have an image for all subjects for quality checking.
> >
> > thanks!
> > Gari
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
Juan Eugenio Iglesias, PhD
http://www.jeiglesias.com
iglesias@nmr.mgh.harvard.edu
Athinoula A. Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, Massachusetts 2129
U.S.A.
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.