From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgreve@mgh.harvard.edu>
Sent: Friday, December 10, 2021 6:45 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [External] Re: [Freesurfer] error in mri_sclimbic_seg

Hard to say what is going wrong from that. Can you try removing the trailing "/" from the subject name? Also, do you need --conform? Often the recon-all output is already conformed, so --conformed is not usually needed. It would be interesting to know if this is making it fail.

On 12/6/2021 5:40 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:

External Email - Use Caution

I receive this error when I try to run mri_sclimbic_seg in dev 2021 12 06

How can I fix this?

mri_sclimbic_seg --s 10105_S1200QUM/ --conform
/usr/local/freesurfer/dev7/python/scripts/mri_sclimbic_seg --s 10105_S1200QUM/ --conform

Excluding seg [853]

Using CPU

Using 1 thread(s)

Loaded lookup table /usr/local/freesurfer/dev7/models/sclimbic.ctab

Loaded population stats /usr/local/freesurfer/dev7/models/sclimbic.volstats.csv
Segmentation fault

Victor Zeng

Beth Israel Deaconess Medical Center

Keshavan Lab

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