sorry, looking at the script, I think:
recon-all -autorecon-pial -s <subject name>
should be all you need, but perhaps someone else can confirm.
Bruce
On Tue, 10 Dec 2013, Rujing Zha wrote:
> Dear Bruce,
> In PialEdit_tktools
> http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_tktools, it
> say this:
>
> recon-all -autorecon-pial -subjid pial_edits_before
> .So I didnot know whether the "-autorecon-pial" option "-autorecon2-pial"
> option I can run.
> Would you please tell me which one I should use?
> Thanks.
> All the best.
>
> 2013-12-10
>
> ____________________________________________________________________________
> Rujing Zha
>
> ____________________________________________________________________________
> 发件人：Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> 发送时间：2013-12-10 21:17
> 主题：Re: [Freesurfer] after PialEdit_tktools
> 收件人："Rujing Zha"<zharj@mail.ustc.edu.cn>
> 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
>
> Hi Rujing,
>
> yes, you should run -autorecon2-pial -autorecon3
>
> cheers
> Bruce
> On Tue, 10 Dec 2013, Rujing
> Zha wrote:
>
> > Dear all,
> > I run "recon-all -autorecon-pial -s subjects" after editing the pial by
> > PialEdit_tktools. However I only find "-autorecon2-pial" option in recon-
> all
> > manual. So I donot know whether I should run the "recon-all -s subjects
> > -autorecon3" to complete all the 31 stages?
> > Thanks.
> > All the best.
> >
> > 2013-12-10
> >
> > _________________________________________________________________________
> ___
> > Rujing Zha
> > School of Life Science
> >
> > University of Science and Technology of China
> >
> > E-mail:
> >
> > zharj@mail.ustc.edu.cn
> >
> > charujing@gmail.com
> >
> > charujing123@163.com
> >
> >
> >
> >
> >
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