recon-all -i /net/data/uTOP/3T_BRAVO/dicom/top3T_0186/Sag_T1_BRAVO_1iso/z127 -T2 /net/data/uTOP/3T_BRAVO/dicom/top3T_0186/sorted/Sag_T2_CUBE_1iso/z4884 -s top3T_0186.fs6.3T.T2pial -all -3T -parallel -T2pial
recon-all -i /net/data/uTOP/3T_BRAVO/dicom/top3T_0186/Sag_T1_BRAVO_1iso/z127 -FLAIR /net/data/uTOP/3T_BRAVO/dicom/top3T_0186/Sag_CUBE_Flair_TR8/z360 -s top3T_0186.fs6.3T.FLAIRpial -all -3T -parallel -FLAIRpial
recon-all -i dicom/top3T_0065/Sag_T1_BRAVO_1iso/Sag_T1_BRAVO_1iso-1.dcm -FLAIR dicom/top3T_0065/Sag_CUBE_Flair_TR8/Sag_CUBE_Flair_TR8-1.dcm -s top3T_0065.fs6.3T.FLAIRpial -all -3T -parallel -FLAIRpial
recon-all -i dicom/top3T_0065/Sag_T1_BRAVO_1iso/Sag_T1_BRAVO_1iso-1.dcm -T2 dicom/top3T_0065/Sag_T2_CUBE_1iso/Sag_T2_CUBE_1iso-1.dcm -s top3T_0065.fs6.3T.T2pial -all -3T -parallel -T2pial