Hi Mahsa, freesurfer does not come with FSL installed. I would suggest you go to the FSL web site and follow their installation instructions. As I remember, it is pretty easy.
doug

On 7/31/14 8:53 AM, mahsa abadian wrote:

I have installed freesurfer V5 on my system (ubuntu 12.4) and there is no FSL in this path /usr/local/freesurfer. I think FSL has not been installed ad I want to install FSL compeletly in ubuntu there are two questions:

1. Should I write any command in terminal before doing anything else? I have understand from mail-list that I must remove FSL but there is no FSL to remove.

2.Should I make any changes to my .tcshrc file( freesurfer environment variable) to install FSL?

please guide me to install FSL.

I would be very appreciate if anybody could help me.

mahsa
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