Thank you so much Bruce and Martin, and I will be so glad to be able to download the files.
 
Best, Gabriel

 




 
> From: reuter@MIT.EDU
> To: nicks@nmr.mgh.harvard.edu; gabriellbk@hotmail.com; fischl@nmr.mgh.harvard.edu
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] autorecon2 error
> Date: Mon, 31 May 2010 03:25:59 -0400
>
> Yes, looks like the one I fixed. Nick can point you to a download for the
> fixed files.
>
> Best, Martin
>
>
> ----- Original Message -----
> From: "Bruce Fischl" <fischl@nmr.mgh.harvard.edu>
> To: "Gabriel Go.Es." <gabriellbk@hotmail.com>
> Cc: "free surfer" <freesurfer@nmr.mgh.harvard.edu>; "Reuter, Martin --
> Martin Reuter" <mreuter@nmr.mgh.harvard.edu>; "Martin Reuter"
> <reuter@mit.edu>
> Sent: Sunday, May 30, 2010 4:50 PM
> Subject: Re: [Freesurfer] autorecon2 error
>
>
> Hi Gabriel,
>
> I think Martin fixed this bug, didn't you Martin?
>
> Bruce
>
> On Sun, 30 May 2010, Gabriel Go.Es. wrote:
>
> >
> >
> > Dear FreeSurfers
> > I run an autorecon1 using the flag -no-wsgcaatlas
> > for skullstripping, I'm using
> > freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0, you may find attached
> > the recon-all_status log
> > for any information you may need
> > Then I was trying to run the autorecon2: recon-all -subjid -autorecon2
> > when it gives the following error message:
> >
> >
> > ------------------------------------------------------
> >
> > Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT
> > 2006 x86_64 x86_64 x86_64 GNU/Linux
> >
> > $Id: recon-all,v 1.133.2.57 2009/08/06 18:27:48 nicks Exp $
> >
> > /root/trabajo/freesurfer/bin/recon-all
> >
> > PWD /root/trabajo/freesurfer/subjects/MP2RAGE_2/mri
> >
> > CMD mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z
> > /root/trabajo/freesurfer/average/RB_all_2008-03-26.gca
> > aseg.auto_noCCseg.mgz
> >
> >
> > mri_ca_label GCA sequential renormalization: label 28 not consistently
> > computed.
> >
> > not using caudate to estimate GM means
> > setting label Left_Cerebellum_Cortex based on Right_Cerebellum_Cortex =
> > 1.05 x + 0
> > estimating mean gm scale to be 1.16 x + 0.0
> > estimating mean wm scale to be 1.00 x + 0.0
> > estimating mean csf scale to be 0.43 x + 0.0
> >
> > saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
> > Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT
> > 2006 x86_64 x86_64 x86_64 GNU/Linux
> >
> > recon-all exited with ERRORS at Fri May 28 14:57:45 CEST 2010
> >
> > -------------------------------------------------------------------
> >
> >
> >
> > any suggestions and help will be so appreciated
> >
> > Best
> >
> > Gabriel
> >
> > ¿Sabes que La Gente de Hoy tiene GUARDAESPALDAS contra el Spam?
> > Con las alertas de Hotmail no perderás detalle de tu correo. ¡Contrátalo
> > ya!
> > _________________________________________________________________
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> > http://www.sietesunpueblodeexpertos.com/index_windows7.html
>
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