Script started on 2024-05-22 15:06:09+02:00 [TERM="xterm-256color" TTY="/dev/pts/0" COLUMNS="72" LINES="46"] -------- freesurfer-linux-ubuntu20_x86_64-7.4.1-20230614-7eb8460 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer/7.4.1 FSFAST_HOME /usr/local/freesurfer/7.4.1/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer/7.4.1/subjects MNI_DIR /usr/local/freesurfer/7.4.1/mni FSL_DIR /home/ringki/fsl ]0;ringki@TABLET-TSKI5C88: ~/fsl_course_data/registration/SamsegOutput ringki@TABLET-TSKI5C88:~/fsl_course_data/registration/SamsegOutput$ run_samseg --input STRUCT_samseg.nii.gz --output ~/fsl_course_data/registration/  SamsegOutput --threads 3 ##---------------------------------------------- Samsegment Options ##---------------------------------------------- output directory: /home/ringki/fsl_course_data/registration/SamsegOutput input images: STRUCT_samseg.nii.gz modelSpecifications: {'FreeSurferLabels': [0, 165, 258, 16, 24, 8, 47, 15, 259, 3, 42, 7, 46, 41, 2, 63, 54, 18, 53, 44, 17, 31, 5, 85, 60, 28, 14, 26, 12, 51, 62, 58, 77, 4, 30, 43, 52, 11, 49, 13, 50, 10, 80, 72], 'atlasFileName': '/usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz', 'names': ['Unknown', 'Skull', 'Soft_Nonbrain_Tissue', 'Brain-Stem', 'CSF', 'Left-Cerebellum-Cortex', 'Right-Cerebellum-Cortex', '4th-Ventricle', 'Fluid_Inside_Eyes', 'Left-Cerebral-Cortex', 'Right-Cerebral-Cortex', 'Left-Cerebellum-White-Matter', 'Right-Cerebellum-White-Matter', 'Right-Cerebral-White-Matter', 'Left-Cerebral-White-Matter', 'Right-choroid-plexus', 'Right-Amygdala', 'Left-Amygdala', 'Right-Hippocampus', 'Right-Inf-Lat-Vent', 'Left-Hippocampus', 'Left-choroid-plexus', 'Left-Inf-Lat-Vent', 'Optic-Chiasm', 'Right-VentralDC', 'Left-VentralDC', '3rd-Ventricle', 'Left-Accumbens-area', 'Left-Putamen', 'Right-Putamen', 'Right-vessel', 'Right-Accumbens-area', 'WM-hypointensities', 'Left-Lateral-Ventricle', 'Left-vessel', 'Right-Lateral-Ventricle', 'Right-Pallidum', 'Left-Caudate', 'Right-Thalamus', 'Left-Pallidum', 'Right-Caudate', 'Left-Thalamus', 'non-WM-hypointensities', '5th-Ventricle'], 'colors': [[0, 0, 0, 0], [255, 165, 0, 255], [128, 128, 128, 255], [119, 159, 176, 255], [60, 60, 60, 255], [230, 148, 34, 255], [230, 148, 34, 255], [42, 204, 164, 255], [128, 0, 128, 255], [205, 62, 78, 255], [205, 62, 78, 255], [220, 248, 164, 255], [220, 248, 164, 255], [0, 225, 0, 255], [245, 245, 245, 255], [0, 200, 221, 255], [103, 255, 255, 255], [103, 255, 255, 255], [220, 216, 20, 255], [196, 58, 250, 255], [220, 216, 20, 255], [0, 200, 200, 255], [196, 58, 250, 255], [234, 169, 30, 255], [165, 42, 42, 255], [165, 42, 42, 255], [204, 182, 142, 255], [255, 165, 0, 255], [236, 13, 176, 255], [236, 13, 176, 255], [160, 32, 240, 255], [255, 165, 0, 255], [200, 70, 255, 255], [120, 18, 134, 255], [160, 32, 240, 255], [120, 18, 134, 255], [13, 48, 255, 255], [122, 186, 220, 255], [0, 118, 14, 255], [12, 48, 255, 255], [122, 186, 220, 255], [0, 118, 14, 255], [164, 108, 226, 255], [120, 190, 150, 255]], 'sharedGMMParameters': [GMMparameter(mergedName='Unknown', numberOfComponents=1, searchStrings=['Unknown', 'Skull']), GMMparameter(mergedName='GlobalWM', numberOfComponents=1, searchStrings=['White', 'Brain-Stem', 'VentralDC', 'Optic-Chiasm', 'Thalamus', 'Pallidum']), GMMparameter(mergedName='GlobalGM', numberOfComponents=1, searchStrings=['Cortex', 'Caudate', 'Hippocampus', 'Amygdala', 'Accumbens', 'hypointensities', 'Thalamus']), GMMparameter(mergedName='GlobalCSF_messy', numberOfComponents=1, searchStrings=['CSF', 'vessel', 'choroid-plexus', 'Fluid']), GMMparameter(mergedName='GlobalCSF_clean', numberOfComponents=1, searchStrings=['Ventricle', 'Inf-Lat-Vent', 'Fluid']), GMMparameter(mergedName='Putamen', numberOfComponents=1, searchStrings=['Putamen']), GMMparameter(mergedName='Soft', numberOfComponents=3, searchStrings=['Soft'])], 'useDiagonalCovarianceMatrices': True, 'maskingProbabilityThreshold': 0.5, 'maskingDistance': 10.0, 'K': 0.1, 'biasFieldSmoothingKernelSize': 50, 'whiteMatterAndCortexSmoothingSigma': 0} optimizationOptions: {'maximumNumberOfDeformationIterations': 20, 'absoluteCostPerVoxelDecreaseStopCriterion': 0.0001, 'verbose': False, 'maximalDeformationStopCriterion': 0.001, 'lineSearchMaximalDeformationIntervalStopCriterion': 0.001, 'maximalDeformationAppliedStopCriterion': 0.0, 'BFGSMaximumMemoryLength': 12, 'multiResolutionSpecification': [{'atlasFileName': '/usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz', 'targetDownsampledVoxelSpacing': 2.0, 'maximumNumberOfIterations': 100, 'estimateBiasField': True}, {'atlasFileName': '/usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz', 'targetDownsampledVoxelSpacing': 1.0, 'maximumNumberOfIterations': 100, 'estimateBiasField': True}]} Constructing image-to-world transform from header information (STRUCT_samseg.nii.gz) Read image: STRUCT_samseg.nii.gz Constructing image-to-world transform from header information (/usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/template.nii) Read image: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/template.nii performing affine atlas registration image: STRUCT_samseg.nii.gz template: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/template.nii Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE min: 0 max: 644 robustMin: 0 robustMax: 514.041 histogram[ 0 ]: 14882 histogram[ 1 ]: 0 histogram[ 2 ]: 0 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.0422477 cumulativeHistogram[ 1 ]: 0.0422477 cumulativeHistogram[ 2 ]: 0.0422477 cumulativeHistogram[ 3997 ]: 0.999997 cumulativeHistogram[ 3998 ]: 0.999997 cumulativeHistogram[ 3999 ]: 1 AFFINE min: 0 max: 644 robustMin: 0 robustMax: 514.041 histogram[ 0 ]: 14882 histogram[ 1 ]: 0 histogram[ 2 ]: 0 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.0422477 cumulativeHistogram[ 1 ]: 0.0422477 cumulativeHistogram[ 2 ]: 0.0422477 cumulativeHistogram[ 3997 ]: 0.999997 cumulativeHistogram[ 3998 ]: 0.999997 cumulativeHistogram[ 3999 ]: 1 Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 0 min: 0 max: 644 robustMin: 0 robustMax: 514.041 histogram[ 0 ]: 14882 histogram[ 1 ]: 0 histogram[ 2 ]: 0 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.0422477 cumulativeHistogram[ 1 ]: 0.0422477 cumulativeHistogram[ 2 ]: 0.0422477 cumulativeHistogram[ 3997 ]: 0.999997 cumulativeHistogram[ 3998 ]: 0.999997 cumulativeHistogram[ 3999 ]: 1 maximalDeformation=1.0000 minLogLikelihood=-0.7611 maximalDeformation=1.6862 minLogLikelihood=-0.7777 maximalDeformation=1.4750 minLogLikelihood=-0.7945 maximalDeformation=1.2925 minLogLikelihood=-0.8050 maximalDeformation=0.9504 minLogLikelihood=-0.8100 maximalDeformation=1.0036 minLogLikelihood=-0.8131 maximalDeformation=0.2880 minLogLikelihood=-0.8143 maximalDeformation=0.0198 minLogLikelihood=-0.8143 maximalDeformation=0.0000 minLogLikelihood=-0.8143 appliedScaling: 1.0160 Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 0 min: 0 max: 644 robustMin: 0 robustMax: 514.041 histogram[ 0 ]: 14882 histogram[ 1 ]: 0 histogram[ 2 ]: 0 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.0422477 cumulativeHistogram[ 1 ]: 0.0422477 cumulativeHistogram[ 2 ]: 0.0422477 cumulativeHistogram[ 3997 ]: 0.999997 cumulativeHistogram[ 3998 ]: 0.999997 cumulativeHistogram[ 3999 ]: 1 maximalDeformation=1.0000 minLogLikelihood=-0.8302 maximalDeformation=0.2745 minLogLikelihood=-0.8304 maximalDeformation=0.0976 minLogLikelihood=-0.8304 maximalDeformation=0.0656 minLogLikelihood=-0.8306 maximalDeformation=0.1658 minLogLikelihood=-0.8309 maximalDeformation=0.0092 minLogLikelihood=-0.8309 maximalDeformation=0.0000 minLogLikelihood=-0.8309 appliedScaling: 1.0033 Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 0 min: 0 max: 644 robustMin: 0 robustMax: 514.041 histogram[ 0 ]: 14882 histogram[ 1 ]: 0 histogram[ 2 ]: 0 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.0422477 cumulativeHistogram[ 1 ]: 0.0422477 cumulativeHistogram[ 2 ]: 0.0422477 cumulativeHistogram[ 3997 ]: 0.999997 cumulativeHistogram[ 3998 ]: 0.999997 cumulativeHistogram[ 3999 ]: 1 maximalDeformation=0.7196 minLogLikelihood=-0.8348 maximalDeformation=0.0000 minLogLikelihood=-0.8348 appliedScaling: 1.0014 writing template transform to /home/ringki/fsl_course_data/registration/SamsegOutput/template.lta writing talairach transform to /home/ringki/fsl_course_data/registration/SamsegOutput/samseg.talairach.lta atlas registration complete: 0:00:25.938044 Constructing image-to-world transform from header information (STRUCT_samseg.nii.gz) Read image: STRUCT_samseg.nii.gz Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Transforming points Transforming points [1.015625 1.015625 1. ] Unknown Unknown (100%) Skull (100%) GlobalWM Brain-Stem (100%) Left-Cerebellum-White-Matter (100%) Right-Cerebellum-White-Matter (100%) Right-Cerebral-White-Matter (100%) Left-Cerebral-White-Matter (100%) Optic-Chiasm (100%) Right-VentralDC (100%) Left-VentralDC (100%) Right-Pallidum (100%) Right-Thalamus (50%) Left-Pallidum (100%) Left-Thalamus (50%) GlobalGM Left-Cerebellum-Cortex (100%) Right-Cerebellum-Cortex (100%) Left-Cerebral-Cortex (100%) Right-Cerebral-Cortex (100%) Right-Amygdala (100%) Left-Amygdala (100%) Right-Hippocampus (100%) Left-Hippocampus (100%) Left-Accumbens-area (100%) Right-Accumbens-area (100%) WM-hypointensities (100%) Left-Caudate (100%) Right-Thalamus (50%) Right-Caudate (100%) Left-Thalamus (50%) non-WM-hypointensities (100%) GlobalCSF_messy CSF (100%) Fluid_Inside_Eyes (50%) Right-choroid-plexus (100%) Left-choroid-plexus (100%) Right-vessel (100%) Left-vessel (100%) GlobalCSF_clean 4th-Ventricle (100%) Fluid_Inside_Eyes (50%) Right-Inf-Lat-Vent (100%) Left-Inf-Lat-Vent (100%) 3rd-Ventricle (100%) Left-Lateral-Ventricle (100%) Right-Lateral-Ventricle (100%) 5th-Ventricle (100%) Putamen Left-Putamen (100%) Right-Putamen (100%) Soft Soft_Nonbrain_Tissue (100%) ==================== { depth: 1 maximumNumberOfDeformationIterations: 20 absoluteCostPerVoxelDecreaseStopCriterion: 0.0001 verbose: False maximalDeformationStopCriterion: 0.001 lineSearchMaximalDeformationIntervalStopCriterion: 0.001 maximalDeformationAppliedStopCriterion: 0.0 BFGSMaximumMemoryLength: 12 multiResolutionSpecification: { depth: 2 atlasFileName: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz targetDownsampledVoxelSpacing: 2.0 maximumNumberOfIterations: 100 estimateBiasField: True }, { depth: 2 atlasFileName: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz targetDownsampledVoxelSpacing: 1.0 maximumNumberOfIterations: 100 estimateBiasField: True } } ==================== Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz Transforming points Transforming points iterationNumber: 0 EM converged! 1 0.398942 SLIDING FutureWarning: The default value of `n_init` will change from 10 to 'auto' in 1.4. Set the value of `n_init` explicitly to suppress the warning L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 blockNumber 0 efficiency: 126.7000 % relative size: 24.6395 % setup time: 1.2095 sec L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 blockNumber 1 efficiency: 128.3933 % relative size: 20.0000 % setup time: 0.6145 sec L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 blockNumber 2 efficiency: 127.1974 % relative size: 18.9204 % setup time: 0.6081 sec L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 blockNumber 3 efficiency: 122.7357 % relative size: 19.8431 % setup time: 0.5968 sec L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 blockNumber 4 efficiency: 127.1474 % relative size: 19.2977 % setup time: 0.6058 sec L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 blockNumber 5 efficiency: 126.6879 % relative size: 23.7617 % setup time: 0.6279 sec Total time spent: 1.3786 sec maximalDeformation=2.3455 Total time spent: 1.1736 sec maximalDeformation=1.3181 Total time spent: 1.1150 sec maximalDeformation=0.9837 Total time spent: 0.0030 sec maximalDeformation=0.0000 maximalDeformationApplied: 2.7207 ======================================================= iterationNumber: 1 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.3099 sec maximalDeformation=0.9719 Total time spent: 1.3018 sec maximalDeformation=1.1376 Total time spent: 1.0990 sec maximalDeformation=1.0771 Total time spent: 0.0031 sec maximalDeformation=0.0000 maximalDeformationApplied: 1.8142 ======================================================= iterationNumber: 2 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.4168 sec maximalDeformation=0.9816 Total time spent: 1.2834 sec maximalDeformation=0.7318 Total time spent: 1.0291 sec maximalDeformation=0.8476 Total time spent: 0.0031 sec maximalDeformation=0.0000 maximalDeformationApplied: 1.9384 ======================================================= iterationNumber: 3 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.3210 sec maximalDeformation=0.7104 Total time spent: 1.0347 sec maximalDeformation=0.8439 Total time spent: 0.9609 sec maximalDeformation=0.5982 Total time spent: 0.0037 sec maximalDeformation=0.0000 maximalDeformationApplied: 1.7072 ======================================================= iterationNumber: 4 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.2096 sec maximalDeformation=0.8494 Total time spent: 1.0121 sec maximalDeformation=0.7369 Total time spent: 0.9503 sec maximalDeformation=0.9738 Total time spent: 0.0030 sec maximalDeformation=0.0000 maximalDeformationApplied: 2.1911 ======================================================= iterationNumber: 5 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.2341 sec maximalDeformation=0.8784 Total time spent: 1.0890 sec maximalDeformation=0.6860 Total time spent: 0.9218 sec maximalDeformation=0.9306 Total time spent: 0.0028 sec maximalDeformation=0.0000 maximalDeformationApplied: 2.3352 ======================================================= iterationNumber: 6 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.1320 sec maximalDeformation=0.8858 Total time spent: 1.0573 sec maximalDeformation=0.7423 Total time spent: 1.0033 sec maximalDeformation=0.5425 Total time spent: 0.0033 sec maximalDeformation=0.0000 maximalDeformationApplied: 1.8393 ======================================================= iterationNumber: 7 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.0969 sec maximalDeformation=0.4317 Total time spent: 1.0330 sec maximalDeformation=0.2635 Total time spent: 0.8456 sec maximalDeformation=0.2330 Total time spent: 0.0031 sec maximalDeformation=0.0000 maximalDeformationApplied: 0.7037 ======================================================= iterationNumber: 8 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.1469 sec maximalDeformation=0.1336 Total time spent: 0.9835 sec maximalDeformation=0.1533 Total time spent: 0.9917 sec maximalDeformation=0.0903 Total time spent: 0.0038 sec maximalDeformation=0.0000 maximalDeformationApplied: 0.2659 ======================================================= iterationNumber: 9 EM converged! 1 0.398942 SLIDING ProbabilisticAtlas reusing warm optimizers!! Total time spent: 1.1334 sec maximalDeformation=0.0820 Total time spent: 1.0976 sec maximalDeformation=0.1198 Total time spent: 0.8241 sec maximalDeformation=0.1144 Total time spent: 0.0030 sec maximalDeformation=0.0000 maximalDeformationApplied: 0.2500 ======================================================= Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Transforming points Transforming points Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz Read mesh collection: /usr/local/freesurfer/7.4.1/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 1 [BRACKETING] Found a really good solution -- no need for zooming: 1 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 7.16011 ----------------------- [BRACKETING] Hit a really bad solution -- ready for zooming: 3.55517 [ZOOMING] Zooming with low=0 and high=3.55517 bisected: 1.77758 [ZOOMING] Found a good solution: 1.77758 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 1.33934 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.132102 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.109576 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0715406 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0258653 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0195591 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0061019 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.00454179 ----------------------- Optimizer: maximalDeformation is too small; stopping iterationNumber: 0 Killed ]0;ringki@TABLET-TSKI5C88: ~/fsl_course_data/registration/SamsegOutput ringki@TABLET-TSKI5C88:~/fsl_course_data/registration/SamsegOutput$ ]0;ringki@TABLET-TSKI5C88: ~/fsl_course_data/registration/SamsegOutput ringki@TABLET-TSKI5C88:~/fsl_course_data/registration/SamsegOutput$ exit exit Script done on 2024-05-22 15:10:40+02:00 [COMMAND_EXIT_CODE="137"]