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Thank you for your reply.

I also want to know which file has just finished with 1-3 steps?

Is it nu.mgz? Or nu.mgz?

T1.mgz aseg.presurf.mgz aparc+aseg.mgz brain.finalsurfs.mgz norm.mgz
aparc.DKTatlas+aseg.mgz brain.mgz nu.mgz aparc.a2009s+aseg.mgz brainmask.auto.mgz
aseg.auto.mgz brainmask.mgz orig.mgz ctrl_pts.mgz orig_nu.mgz
wm.asegedit.mgz aseg.auto_noCCseg.mgz filled.mgz rawavg.mgz wm.mgz
aseg.mgz lh.ribbon.mgz rh.ribbon.mgz wm.seg.mgz aseg.presurf.hypos.mgz
ribbon.mgz wmparc.mgz

Best,

ping

Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> 于2019年6月23日周日下午9:35写道：

It does 1-3. It also labels cerebellum which you could then use to perform #4

On 6/23/2019 7:03 AM, ping cao wrote:
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Dear expert，

Thank you for reading!

I want to do these four pre-processing steps:

1. Re-sampling each MR image to 256*256*256;

2. Using the N3 algorithm for intensity inhomogeneity correction;

3. Skull stripping;

4. Removing the cerebellum.

Does " recon-all"  do all the above 4 steps automatically? If so, which file is just finished with these four steps? If not, how can I do these steps?

Your help is greatly appreciated.

Best,

ping
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