Thanks, way.

This is an unsual one. Does aseg.mgz look OK?

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.org>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, March 1, 2021 at 23:40
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Hippocampal subfield segmentation

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Hi, Dr. Iglesias Gonzalez

Here is the full log, Thanks

Best,

Wei

On Mon, Mar 1, 2021 at 10:33 PM Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:

Dear Wei,

Can you please provide us with the full log?

Cheers,

/E

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.org>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, March 1, 2021 at 21:14
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampal subfield segmentation

        External Email - Use Caution        

Hi, Freesurfer expert 

I tried Hippocampal subfield segmentation with an additional T2 scan by using FS7.1.0 

Here is the log error massage

Attempted to access cropping(1); index out of bounds because numel(cropping)=0.

Error in applyCropping (line 7)



Error in segmentSubjectT1T2_autoEstimateAlveusML (line 950)



MATLAB:badsubscript
@#@FSTIME  2021:03:01:20:38:39 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 e 243.67 S 3.47 U 220.01 P 91% M 1248336 F 144 R 909119 W 0 c 49601 w 14948 I 320352 O 429920 L 30.66 34.91 35.10
@#@FSLOADPOST 2021:03:01:20:42:43 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 18 47.20 43.27 38.55
Linux gra813 3.10.0-1127.8.2.el7.x86_64 #1 SMP Tue May 12 16:57:42 UTC 2020 x86_64 GNU/Linux

T2 hippocampal subfields exited with ERRORS at Mon Mar  1 20:42:43 EST 2021

For more details, see the log file /home/weishao//BAY11958/scripts/hippocampal-subfields-T2.T2.log

Could you tell me how to fix this? Thanks.

Best,

Wei

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