my guess is that your subject is out-of-sync, ie, maybe you edited it and reran part of it (eg, autorecon2) but not all of it (eg, autorecon3)
Try looking at the time stamps and or running vno_match_check


On 9/27/2022 3:10 AM, Caspar Schwiedrzik wrote:

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Hi!
I am having issue with mris_ca_label while trying to apply the Yeo 2011 atlas to single subject surfaces.
Specifically, I am getting "surface doesn't match" from mrisReadTriangleFile  and "could not read spherical coordinate system" from mris_ca_label.
lh.smoothwm and lh.sphere.reg both exist in the specified places.
It does not matter from where I run the below command. I also tried adding -sdir, which did not change anything.
It happens with v5.3 and v7.
I have seen a couple of bug reports on this specific error, but no solution other than re-running recon all, which is not an option in my case.
Any advice would be appreciated.
Thank you! Caspar

mris_ca_label -l /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/label/lh.cortex.label \
9152127433 lh /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/surf/lh.sphere.reg \
/home/local/GWDG/cschwie3/ukme11/common/Software/YeoParcellation/lh.Yeo2011_17Networks.gcs \
/home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/label/lh.Yeo2011_17Networks_N1000.annot

$Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $
$Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $
reading atlas from /home/local/GWDG/cschwie3/ukme11/common/Software/YeoParcellation/lh.Yeo2011_17Networks.gcs...
reading color table from GCSA file....
average std = 8.4   using min determinant for regularization = 0.705
0 singular and 246 ill-conditioned covariance matrices regularized
mrisReadTriangleFile(/home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/surf/lh.sphere.reg): surface doesn't match /neuro_tools/freesurfer/subjects/9152127433/surf/lh.smoothwm

No such file or directory
mrisReadTriangleFile failed.

No such file or directory
mris_ca_label: could not read spherical coordinate system from /home/local/GWDG/cschwie3/ukme11/cschwie3/patients/ecog/9152127433/recon/surf/lh.sphere.reg for 9152127433
No such file or directory



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