Hi Andrew,

I can’t answer if wm-hypointensity is supported in recon-all-clinical. I’m assuming that you obtained aseg.stats by running mri_segstats. How does your command look like?

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Andrew Dedinas Geoly
Sent: Tuesday, July 18, 2023 11:44 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] WM Hypointensities

External Email - Use Caution

Hi Freesurfer experts!

I am hoping to extract the wm-hypointensity data from some recon-all-clinical runs. I was able to extract aseg.stats information correctly but noticed there was no information regarding the wm-hypointensities.

Is this supported by recon-all-clinical?

Best,

Andrew

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Andrew D. Geoly, MS

Research Data Analyst 1

Brain Stimulation Lab

Department of Psychiatry and Behavioral Sciences

Stanford University School of Medicine