Dear All,

I am stuck. Several brains I segment need both wm and pial edits, typically deleting incorrectly incorporated voxels, such as dural voxels for pia, and basal temporal hyperintensity artifact or bright dural voxels included due to partial volume effects for wm.

I edited brainmask.mgz or brain.finalsurfs.manedit.mgz for pia, and wm.mgz for wm. Rerunning recon-all led as expected to pial correction, however wm edits did not end up in ?h.white, despite increasingly desperate efforts and commands:

recon-all -autorecon2-wm -autorecon3

recon-all -autorecon2 -autorecon3

recon-all -make all

Please advise, I could FTP one subject to you for suggestions. Again, edits here are all voxel deletions and not additions to wm.mgz.

Thank you,

Octavian