External Email - Use Caution        

Dear Sir，
I am wonder how to unsubscribe the mails likes ，
my mailbox is almost full and i can not recieve mails from my workmates

Shaoxun Yuan, PhD Candidate

State Key Laboratory of Bioelectronics

School of Biological Science and Medical Engineering

Southeast University, Nanjing, 210018, China

Phone:(86)18761869223

 
From: Iglesias Gonzalez, Eugenio
Date: 2019-01-16 23:03
To: Freesurfer support list
Subject: Re: [Freesurfer] Longitudinal Hippocampal Subfields - error during segmentation {Disarmed}

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Hi Rachel,

Sorry I missed your previous email.

Would you mind uploading your subject(s), so I can take a look?

Cheers,

/E

 

-- 

Juan Eugenio Iglesias

 

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

 

Research staff

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

 

Research Affiliate

Computer Science and Artificial Intelligence Laboratory (CSAIL)

Massachusetts Institute of Technology

 

Lecturer on Radiology

Harvard Medical School

 

http://www.jeiglesias.com 

 

 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rachel Phillips <rachel.phillips@duke.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 16 January 2019 at 09:37
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Longitudinal Hippocampal Subfields - error during segmentation {Disarmed}

 

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Any guidance on this error is appreciated. I am still receiving the same output stated earlier.

 

Rachel Phillips

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rachel Phillips <rachel.phillips@duke.edu>
Sent: Monday, January 7, 2019 9:11:47 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Longitudinal Hippocampal Subfields - error during segmentation {Disarmed}

 

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Version 6.0 

 

Thanks,

Rachel

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.uk>
Sent: Monday, January 7, 2019 2:50:57 AM
To: freesurfer@nmr.mgh.harvard.edu; Freesurfer support list
Cc: Courtney Haswell
Subject: Re: [Freesurfer] Longitudinal Hippocampal Subfields - error during segmentation {Disarmed}

 

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Hi Rachel

This is very weird. What exact version are you using? 6.0 or dev?

Cheers

Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

Research staff

Martinos Center for Biomedical Imaging

Massachusetts General Hospital and Harvard Medical School

Research Affiliate

Computer Science and Artificial Intelligence Laboratory (CSAIL)

Massachusetts Institute of Technology

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rachel Phillips <rachel.phillips@duke.edu>
Sent: Friday, January 4, 2019 7:43:45 PM
To: freesurfer@nmr.mgh.harvard.edu
Cc: Courtney Haswell
Subject: [Freesurfer] Longitudinal Hippocampal Subfields - error during segmentation

 

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Hello,

 

I have run a longitudinal sample (up to 4 timepoints per subject) through the Freesurfer 6.0 longitudinal processing pipeline, and currently I am attempting to produce the longitudinal hippocampal subfield segmentation with the following command: longHippoSubfieldsT1.sh <baseID> [SubjectsDirectory]. I am receiving the following error: "Error using SegmentSubfeldsT1Longitudinal (line 441) The vector of prior probabilities in the mesh nodes must always sum to one over all classes".

 

Below is an example of the output that precedes this error:

 

[> In SegmentSubfieldsT1Longitudinal at 418] 

Reading contexts of file /usr/local/packages/freesurfer_v6.0.0/average/HippoSF/atlas/compressionLookupTable.txt

--------------

Making Lateral-nucleus map to reduced label 1

Making Paralaminar-nucleus map to reduced label 1

Making Basal-nucleus map to reduced label 1

Making Accessory-Basal-nucleus map to reduced label 1

Making Corticoamygdaloid-transitio map to reduced label 1

Making Central-nucleus map to reduced label 1

Making Cortical-nucleus map to reduced label 1

Making Medial-nucleus map to reduced label 1

Making Anterior-amygdaloid-area-AAA map to reduced label 1

--------------

Making alveus map to reduced label 2

Making Hippocampal_tail map to reduced label 2

Making HATA map to reduced label 2

Making fimbria map to reduced label 2

Making parasubiculum map to reduced label 2

Making hippocampal-fissure map to reduced label 2

--------------

Making Left-Cerebral-Cortex map to reduced label 3

--------------

Making Left-Cerebral-White-Matter map to reduced label 4

--------------

Making Left-Lateral-Ventricle map to reduced label 5

--------------

Making Left-choroid-plexus map to reduced label 6

--------------

Making Unknown map to reduced label 7

--------------

Making Left-VentralDC map to reduced label 8

--------------

Making Left-Putamen map to reduced label 9

--------------

Making Left-Pallidum map to reduced label 10

--------------

Making Left-Thalamus-Proper map to reduced label 11

--------------

Making Left-Accumbens-area map to reduced label 12

--------------

Making Left-Caudate map to reduced label 13

Error using SegmentSubfieldsT1Longitudinal (line 441)

The vector of prior probabilities in the mesh nodes must always sum to one over all classes

 

Any guidance on this error would be greatly appreciated.

 

Thanks,

Rachel