they should be /home/developer/Desktop/Project/sess1/bold/001/f.nii.gz
I think nii should work as well

On 10/22/2022 6:37 AM, Noam Khayat wrote:

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Hi again Douglas,

I'm trying to do the preprocessing of the functional data for the retinotopy runs.

I copied the files from matlab (I used SPM for some of my analysis). 

When I try to run preproc-sess or selxavg3-sess I keep getting an error: "ERROR: could not determine format for /home/developer/Desktop/Project/sess1/bold/001/f".

I'm not sure if the problem is in my nii files which I copied to the run directory - should they be named someway? should they be compressed and zipped?

I can't find answers in the wiki or mail-archive.

 

What am I missing?

Thank you!

Noam

‫בתאריך יום ב׳, 17 באוק׳ 2022 ב-9:30 מאת ‪Noam Khayat‬‏ <‪noamkhayat@gmail.com‬‏>:‬

It works, thank you!

Noam

‫בתאריך יום ב׳, 17 באוק׳ 2022 ב-0:20 מאת ‪Douglas N. Greve‬‏ <‪dgreve@mgh.harvard.edu‬‏>:‬

Try this:
Click on the "brain with scissors icon" ("Cut"), select the points, then hit "Cut Closed Line".
Now,  make sure the cursor is in the patch you want to keep, then hit "Fill Uncut Area"

On 10/14/2022 3:14 AM, Noam Khayat wrote:

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Hello,

I need to cut the occipital pole in order to make a retinotopy analysis. I read that tksurfer no more exists, and with freeview I only succeed in cutting the plane but I'm having trouble with separating it into a patch with the occipital part only.

Do you know if there is a way to do this?

Thanks!

Noam

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