Your recon-all should have generated the following label files in your subject’s label directory:

label/?h.FG1.mpm.vpnl.label

label/?h.FG2.mpm.vpnl.label

label/?h.FG3.mpm.vpnl.label

label/?h.FG4.mpm.vpnl.label

label/?h.hOc1.mpm.vpnl.label

label/?h.hOc2.mpm.vpnl.label

label/?h.hOc3v.mpm.vpnl.label

label/?h.hOc4v.mpm.vpnl.label

I don’t know how you got your Freesurfer distributions. But it looks like your average/colortable_vpnl.txt is out of sync with mris_label2annot.

1. download these two colortables from Freesurfer repo - https://github.com/freesurfer/freesurfer.git

distribution/average/colortable_BA_thresh.txt

distribution/average/colortable_vpnl.txt

2. copy them to your average/ directory

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of LYU, TIANXIANG
Sent: Tuesday, May 7, 2024 12:30 AM
To: freesurfer@nmr.mgh.harvard.edu
Cc: 内田航 <w-uchida@juntendo.ac.jp>
Subject: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt

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Hello FreeSurfer Developers,

I'm attempting to process recon-all commands, but in mris_label2annot command:

ERROR: FG1.mpm.vpnl not found in CTAB /vol0004/hp200139/data/u12257/freesurfer/average/colortable_vpnl.txt
Command exited with non-zero status 1
@#@FSTIME  2024:05:07:07:05:22 mris_label2annot N 26 e 4.35 S 0.34 U 2.65 P 68% M 203264 F 4 R 3608 W 0 c 0 w 1728 I 18304 O 0 L 0.92 0.91 0.96

I've checked the directory, but find nothing strange. (file colortable_vpnl.txt exists)

I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use. 

Sincerely,

Tianxiang Lyu

Graduate School of Medicine,

Juntendo University