Hi,
In order to get the three BEMs for 3D source reconstruction for
subject X, I used:
mri_watershed -atlas -useSRAS -surf X/bem/watershed/X
X/mri/T1.mgz X/bem/watershed/ws
which created the BEMs in X/bem/watershed/, but the inner_skull and
the brain were significantly distorted, mainly on the left side (the
scalp BEM is okay).
I followed the tutorial on troubleshooting the surfaces in the X/surf/
folder, but that does not address fixing these BEMs, so I was
wondering if anybody knows how to get around this problem (should I
edit the T1.mgz volume and run again?).
Thank you,
Silviu Podariu
UNMC
Omaha, NE
P.S. Also, I was wondering if there is a utility to reduce the number
of vertices of a given surface (i.e. to make a less precise
triangulation) at will. I
thought I may use the pial left and right
halves greatly reduced (from about 140k vertices to 10k or less) for
the brain surface instead of the mri_watershed output.
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