Have you seen this page?
https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat


On 11/12/2021 6:23 AM, Alberto Del Cerro Leon wrote:

        External Email - Use Caution        

Hello Freesurfer team, I did a white matter atlas from surface annot with mri_aparc2aseg. However, when I use this atlas in comparison with the original T1 I have observed that both images don't share the transformation matrix. Do you know how I could I fix this issue?

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer