Hi Freesurfer team,

Any ideas for the below issue we are having?

We are having issues running recon-all on our dicom files, as they are saved as a mosaic. When we open the original dicom file (attached) it lists out the rows, columns and slices. However, when we run mriparsesdcmdir, it just posts 0’s for the rows and columns (screen shot attached).

We are able to recreate the output file necessary to run recon-all (basically fill in the missing 0’s). Is there a way to tell recon-all to call on this file to retrieve the missing data manually?

Thank you,
Ashley
Ashley N. Stillman
Clinical Psychology Graduate Research Assistant
University of Tulsa, T.R.A.P.T. Lab
Laureate Institute for Brain Research