Hi Pooja
I'd suggest reading in the mgz volume with MATLAB (you can use the function MRIread in $FREESURFER_HOME/matlab) and export it to your favorite format from there
Cheers
Eugenio

Sent from my phone, please excuse brevity and typos

From: pooja prabhu <prabhuppooja@gmail.com>
Sent: Thursday, March 22, 2018 9:47:52 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Regarding hippocampus tesellation
 
Hello,
This is Pooja. I am trying to segment the hippocampus using the function introduced by Freesurfer i.e -hippocampal-subfields. Segmentation was successful but the final file format is .mgz. Could you please guide me how can i tessellate the hippocampus and cortical surface? i want this surface to place the dipole so please help me.
Thank 

--
Thank You
Pooja Prabhu

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