External Email - Use Caution        

Hello FreeSurfer Developers,

I have a problem to convert the files using the recon-all. 

It appears, recon-all -s 1 exited with ERRORS. 

Before I had the last version (stable v6.0.0). As I did not find a solution of how to fix this problem, so I decided to make a downgrade to the previous version (5.3.0 stable).  I thought that maybe the oldest version of this program was solved. But no, I still have the same problem.  How I can fix this problem permanently? 

My code is: 

$ export SUBJECTS_DIR=/home/regal/Data/Subjects/test_old_version

$ recon-all -s 1 /home/regal/Data/Subjects/test_old_version/01C_dislebi_T1.nii -autorecon-all

 

than:

" ERROR: Flag /home/regal/Data/Subjects/test_old_version/01C_dislebi_T1.nii unrecognized.

-s 1 /home/regal/Data/Subjects/test_old_version/01C_dislebi_T1.nii -autorecon-all

Linux genedys2 4.15.0-2-amd64 #1 SMP Debian 4.15.11-1 (2018-03-20) x86_64 GNU/Linux

recon-all -s 1 exited with ERRORS at Tue Jul  3 18:47:19 CEST 2018

For more details, see the log file 

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting "

1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

2) Platform: Linux genedys2 4.15.0-2-amd64 #1 SMP Debian 4.15.11-1 (2018-03-20) x86_64 GNU/Linux

Thank you for your help, 

Best regards 

--

Bernardo Regal

Sender notified by Mailtrack 07/03/18, 7:27:54 PM