发件人：Bronwyn Overs <b.overs@neura.edu.au>

发送时间：2015-10-14 08:11

主题：[Freesurfer] Problem with fsgd file

收件人："Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu>

抄送：

 

Dear mailing list,

I am trying to run a longitudinal 2 stage model using mri_glmfit. Here is the command I am using:

mri_glmfit --fsgd long-2stage_ConAR.fsgd --glmdir long-2stage_ConAR.area.lh.spc.glmdir --y long-ConAR.lh.area-spc.stack.fwhm10.mgh dods --C me_age-all.mtx --C me_gender.mtx --C me_group.mtx --C int_ageXgroup.mtx --C int_ageXgender.mtx --C int_genderXgroup.mtx --C int_ageXgenderXgroup.mtx --surf fsaverage lh --label long-ConAR.lh.area.fsaverage.cortex.label

However, when I try to run the command it has problems reading my fsgd file. I have attached my file for reference and here are the errors it spits out:

gdfReadHeader: reading long-2stage_ConAR.fsgd
INFO: ignoring tag 7541001001
INFO: ignoring tag 7541002001
INFO: ignoring tag 7541003001
INFO: ignoring tag 7541006001
INFO: ignoring tag 7541009001
INFO: ignoring tag 7541011004
INFO: ignoring tag 7541012004
INFO: ignoring tag 7541017001
INFO: ignoring tag 7541018001
INFO: ignoring tag 7541020001
INFO: ignoring tag 7541022001
INFO: ignoring tag 7541023001
INFO: ignoring tag 7541024001
INFO: ignoring tag 7541026001
INFO: ignoring tag 7541030001
INFO: ignoring tag 7541031001
INFO: ignoring tag 7541036001
INFO: ignoring tag 7541040001
INFO: ignoring tag 7541041001
INFO: ignoring tag 7541042001
INFO: ignoring tag 7541044001
INFO: ignoring tag 7541046001
INFO: ignoring tag 7541047001
INFO: ignoring tag 7541048004
INFO: ignoring tag 7541049001
INFO: ignoring tag 7541052001
INFO: ignoring tag 7541055001
INFO: ignoring tag 7541057001
INFO: ignoring tag 7541058001
INFO: ignoring tag 7541059001
INFO: ignoring tag 7541060001
INFO: ignoring tag 7541062001
INFO: ignoring tag 7541070001
INFO: ignoring tag 7541075001
INFO: ignoring tag 7541078001
INFO: ignoring tag 7541080001
INFO: ignoring tag 7541084001
INFO: ignoring tag 7541085001
INFO: ignoring tag 7541088001
INFO: ignoring tag 7541090001
INFO: ignoring tag 7541093001
INFO: ignoring tag 7541094001
INFO: ignoring tag 7541096001
INFO: ignoring tag 7541097004
INFO: ignoring tag 7541099001
INFO: ignoring tag 7541100001
INFO: ignoring tag 7541101001
INFO: ignoring tag 7541102001
INFO: ignoring tag 7541103001
INFO: ignoring tag 7541106001
INFO: ignoring tag 7541108001
INFO: ignoring tag 7541110004
INFO: ignoring tag 7541112001
INFO: ignoring tag 7541114001
INFO: ignoring tag 7541116001
INFO: ignoring tag 7541118001
INFO: ignoring tag 7541119001
INFO: ignoring tag 7541120001
INFO: ignoring tag 7541124001
INFO: ignoring tag 7541125001
INFO: ignoring tag 7541132004
INFO: ignoring tag 7541133001
INFO: ignoring tag 7541139001
INFO: ignoring tag 7541142001
INFO: ignoring tag 7541143001
INFO: ignoring tag 7541146001
INFO: ignoring tag 7541149001
INFO: ignoring tag 7541150001
INFO: ignoring tag 7541151001
INFO: ignoring tag 7541156001
INFO: ignoring tag 7541161001
INFO: ignoring tag 7541165001
INFO: ignoring tag 7541168001
INFO: ignoring tag 7541175001
INFO: ignoring tag 7541177001
INFO: ignoring tag 7541178001
INFO: ignoring tag 7541182001
INFO: ignoring tag 7541185001
INFO: ignoring tag 7541188001
INFO: ignoring tag 7541190004
INFO: ignoring tag 7541192004
INFO: ignoring tag 7541196001
INFO: ignoring tag 7541198001
INFO: ignoring tag 7541209001
INFO: ignoring tag 7541223001
INFO: ignoring tag 7541227001
INFO: ignoring tag 7541334001
INFO: ignoring tag 7541337001
INFO: ignoring tag 7541345001
INFO: ignoring tag 7541346001
INFO: ignoring tag 7541353001
INFO: ignoring tag 7541366001
INFO: ignoring tag 7541378001
INFO: ignoring tag 7541383001
INFO: ignoring tag 7541388001
INFO: ignoring tag 7541391001
INFO: ignoring tag 7541396001
INFO: ignoring tag 7541400001
INFO: ignoring tag 7541401001
INFO: ignoring tag 7541402001
INFO: ignoring tag 7541409001
INFO: ignoring tag 7541411001
INFO: ignoring tag 7541412001
INFO: ignoring tag 7541421001
INFO: ignoring tag 7541442004
INFO: ignoring tag 7541443001
INFO: ignoring tag 7541445001
WARNING: gdfReadV1: class genderM-groupCtl is defined but not used.
INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done.
Continuous Variable Means (all subjects)
0 years -nan -nan
1 age_mc -nan -nan
Class Means of each Continuous Variable
1 genderM-groupCtl     -nan     -nan
2 genderF-groupCtl     -nan     -nan
3 genderM-groupAR     -nan     -nan
4 genderF-groupAR     -nan     -nan
INFO: gd2mtx_method is dods
ERROR: Option dods unknown

Can you tell me what is wrong?

Kind regards,

Bronwyn Overs
Research Assistant

Neuroscience Research Australia
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