Dear Freesurfer users,

I hope you could help me with that problem. I do the recon-all preprocessing step and then I try tksurfer. But the following error comes up. Moreover tksurfer window open up but it looks like ‘empty’. Please find it attached.

Thank you very much!

Daniel Ferreira

-------- freesurfer-Linux-centos4-stable-pub-v4.5.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /home/Neuropsicologia/freesurfer
FSFAST_HOME       /home/Neuropsicologia/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR      /home/Neuropsicologia/DANI/subjects
MNI_DIR           /home/Neuropsicologia/freesurfer/mni
FSL_DIR           /home/Neuropsicologia/fsl


Neuropsicologia@linux-tand:~> cd DANI/subjects


Neuropsicologia@linux-tand:~/DANI/subjects> tksurfer GJ25_3D lh inflated -aparc -gray
surfer: current subjects dir: /home/Neuropsicologia/DANI/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer:     /home/Neuropsicologia/DANI/subjects
surfer: Reading header info from /home/Neuropsicologia/DANI/subjects/GJ25_3D/mri/T1.mgz
surfer: vertices=123902, faces=247800
surfer: curvature read: min=-1.349975 max=2.259740
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt)
Found embedded color table in annotation.
surfer: single buffered window
surfer: tkoInitWindow(GJ25_3D)
surfer: using interface /home/Neuropsicologia/freesurfer/lib/tcl/tksurfer.tcl
Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_common.tcl
Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_wrappers.tcl
Reading /home/Neuropsicologia/freesurfer/lib/tcl/fsgdfPlot.tcl
Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
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