Hi Doug,

To follow-up: I have been running recon-all subject -qcache but for some of my subjects it "exited with ERRORS" due to unmatched number of vertices. I read from previous threads that the general fix is to run -autorecon2 and -autorecon3 again. However, I hesitate to do that in my case due to the difference in Freesurfer versions. What do you think I can do?

Thanks,
Cherry


On Thu, Apr 24, 2014 at 12:06 PM, Yizhou Ma <ym850@nyu.edu> wrote:
Great. Thanks Doug.


On Thu, Apr 24, 2014 at 10:39 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

It is ok to run -qcache using 5.3.


On 04/23/2014 10:54 PM, Yizhou Ma wrote:
> Dear Freesurfer experts,
>
> I have processed my images and done analysis with cortical thickness
> using FS510. Now that I want to do vertex-wise analysis with surface
> area and volume, I learned that there is a bug in FS510 with this.
> (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019903.html)
> Before I go on to use recon-all subject -qcache in FS530 to generate
> vertex-wise surface area and volume maps, I want to make sure that
> this would not cause concerns about use of mixed versions of
> Freesurfer, or concerns about interpreting my cortical thickness and
> surface area/volume findings together. And if it does, what should I do?
>
> Thanks a lot,
> Cherry
>
>
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
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