I'm attempting to transform the Yeo2011 annotations (lh & rh) from fsaverage to individual subjects so as to then sample the cortical maps to subject surfaces using mri_label2vol. However, I'm getting the error in the subject line when I put in the following commands:
mri_surf2surf --srcsubject fsaverage \
--srcsurfval lh.Yeo2011_17Networks_N1000.annot \
--trgsubject HS_001 --trgsurfval lh.Yeo_17Network_native.annot --hemi lh
I suspected that I have to put a src_type and trg_type in there, but I wasn't sure what type of types would be appropriate for use in mri_label2vol. For the latter command I was planning on utilizing something similar to a previous e-mailer's command (below):
mri_label2vol --annot lh.Yeo2011_17Networks_N1000.HS_001.annot \
--o outfile.nii.gz --hemi lh --subject HS_001 \
--temp $SUBJECTS_DIR/HS_001/mri/orig.mgz --identity
Any suggestions for getting past this error?
Thanks for your help,
Paul
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Paul Beach
DO/PhD candidate - Year VI
Michigan State University
- College of Osteopathic Medicine
- Neuroscience Program
- Bozoki Lab: Neurology/Radiology