mri_glmfit-sim --glmdir /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again/ --cache-dir /nobackup/etsch2/kids/prepost-61kids//average/mult-comp-cor/ --cache 3.0 abs --cwp 0.05 --2spaces cmdline mri_glmfit --y /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/y.mgh --fsgd /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/qdec.fsgd dods --glmdir /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled --surf 81kids_template rh --C /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/contrasts/rh-Avg-Intercept-long.area-spc.mat --C /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/contrasts/rh-Diff-1-3-Intercept-long.area-spc.mat SURFACE: 81kids_template rh log file is /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//cache.mri_glmfit-sim.log cd /home/raid2/ckuehn /afs/cbs.mpg.de/software/freesurfer/5.3.0/ubuntu-xenial-amd64/bin/mri_glmfit-sim --glmdir /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again/ --cache-dir /nobackup/etsch2/kids/prepost-61kids//average/mult-comp-cor/ --cache 3.0 abs --cwp 0.05 --2spaces $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37 greve Exp $ Tue Feb 21 17:52:29 CET 2017 Linux etsch 4.4.0-62-generic #83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux ckuehn setenv SUBJECTS_DIR /nobackup/etsch2/kids/prepost-61kids/ FREESURFER_HOME /afs/cbs.mpg.de/software/freesurfer/5.3.0/ubuntu-xenial-amd64 Original mri_glmfit command line: cmdline mri_glmfit --y /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/y.mgh --fsgd /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/qdec.fsgd dods --glmdir /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled --surf 81kids_template rh --C /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/contrasts/rh-Avg-Intercept-long.area-spc.mat --C /nobackup/etsch2/kids/prepost-61kids/qdec/Untitled/contrasts/rh-Diff-1-3-Intercept-long.area-spc.mat DoSim = 0 UseCache = 1 DoPoll = 0 DoPBSubmit = 0 DoBackground = 0 DiagCluster = 0 gd2mtx = dods fwhm = 8.390561 CSD /nobackup/etsch2/kids/prepost-61kids//average/mult-comp-cor//81kids_template/rh/cortex/fwhm08/abs/th30/mc-z.csd mri_surfcluster --in /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/sig.mgh --csd /nobackup/etsch2/kids/prepost-61kids//average/mult-comp-cor//81kids_template/rh/cortex/fwhm08/abs/th30/mc-z.csd --mask /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//mask.mgh --cwsig /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh --vwsig /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.voxel.mgh --sum /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.summary --ocn /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh --oannot /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.annot --annot aparc --csdpdf /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.pdf.dat --cwpvalthresh 0.05 --o /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.masked.mgh --no-fixmni --bonferroni 2 --surf white Creating CDFs from CSD files csd->threshsign = 0 thsign = abs, id = 0 version $Id: mri_surfcluster.c,v 1.51.2.3 2012/05/31 22:10:05 greve Exp $ hemi = rh srcid = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/sig.mgh srcsubjid = 81kids_template srcsurf = white srcframe = 0 thsign = abs thmin = 3 thmax = -1 fdr = -1 minarea = 0 Bonferroni = 2 xfmfile = talairach.xfm nth = -1 outid = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.masked.mgh MGH ocnid = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh MGH sumfile = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.summary subjectsdir = /nobackup/etsch2/kids/prepost-61kids/ FixMNI = 0 Found 89846 vertices in mask Found 89846 vertices in mask Found 89846 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /nobackup/etsch2/kids/prepost-61kids//81kids_template/mri/transforms/talairach.xfm 1.179 -0.002 -0.020 5.339; -0.003 1.244 -0.111 -14.198; 0.028 0.025 1.307 -11.932; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /nobackup/etsch2/kids/prepost-61kids//81kids_template/surf/rh.white Done reading source surface Reading annotation /nobackup/etsch2/kids/prepost-61kids//81kids_template/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Computing metric properties Loading source values number of voxels in search space = 89846 Done loading source values (nvtxs = 98497) overall max = 3.11852 at vertex 5647 overall min = -4.11048 at vertex 49987 surface nvertices 98497 surface area 67948.492188 surface area 67948.421875 Computing voxel-wise significance CSDpvalMaxSigMap(): found 109/98497 above 0 NOT Adjusting threshold for 1-tailed test Searching for Clusters ... thmin=3.000000 (3.000000), thmax=-1.000000 (-1), thsignid=0, minarea=0.000000 Found 6 clusters Max cluster size 20.754253 Pruning by CW P-Value 0.05 Saving thresholded output to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.masked.mgh Saving cluster numbers to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh Saving cluster pval /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh Constructing output annotation Writing annotation /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.annot mri_segstats --seg /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh --exclude 0 --i /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//y.mgh --avgwf /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.658856 $Id: mri_segstats.c,v 1.101 2013/08/20 15:52:54 greve Exp $ cwd cmdline mri_segstats --seg /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh --exclude 0 --i /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//y.mgh --avgwf /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.658856 sysname Linux hostname etsch machine x86_64 user ckuehn UseRobust 0 Loading /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh Loading /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//y.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 0 segmentations Computing spatial average of each frame Writing to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.y.ocn.dat mri_segstats done mri_convert /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh --frame 0 mri_convert /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Avg-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh... mri_surfcluster --in /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/sig.mgh --csd /nobackup/etsch2/kids/prepost-61kids//average/mult-comp-cor//81kids_template/rh/cortex/fwhm08/abs/th30/mc-z.csd --mask /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//mask.mgh --cwsig /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh --vwsig /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.voxel.mgh --sum /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.summary --ocn /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh --oannot /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.annot --annot aparc --csdpdf /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.pdf.dat --cwpvalthresh 0.05 --o /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.masked.mgh --no-fixmni --bonferroni 2 --surf white Creating CDFs from CSD files csd->threshsign = 0 thsign = abs, id = 0 version $Id: mri_surfcluster.c,v 1.51.2.3 2012/05/31 22:10:05 greve Exp $ hemi = rh srcid = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/sig.mgh srcsubjid = 81kids_template srcsurf = white srcframe = 0 thsign = abs thmin = 3 thmax = -1 fdr = -1 minarea = 0 Bonferroni = 2 xfmfile = talairach.xfm nth = -1 outid = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.masked.mgh MGH ocnid = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh MGH sumfile = /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.summary subjectsdir = /nobackup/etsch2/kids/prepost-61kids/ FixMNI = 0 Found 89846 vertices in mask Found 89846 vertices in mask Found 89846 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /nobackup/etsch2/kids/prepost-61kids//81kids_template/mri/transforms/talairach.xfm 1.179 -0.002 -0.020 5.339; -0.003 1.244 -0.111 -14.198; 0.028 0.025 1.307 -11.932; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /nobackup/etsch2/kids/prepost-61kids//81kids_template/surf/rh.white Done reading source surface Reading annotation /nobackup/etsch2/kids/prepost-61kids//81kids_template/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Computing metric properties Loading source values number of voxels in search space = 89846 Done loading source values (nvtxs = 98497) overall max = 4.40787 at vertex 16931 overall min = -3.53455 at vertex 89551 surface nvertices 98497 surface area 67948.492188 surface area 67948.421875 Computing voxel-wise significance CSDpvalMaxSigMap(): found 214/98497 above 0 NOT Adjusting threshold for 1-tailed test Searching for Clusters ... thmin=3.000000 (3.000000), thmax=-1.000000 (-1), thsignid=0, minarea=0.000000 Found 5 clusters Max cluster size 112.311874 Pruning by CW P-Value 0.05 Saving thresholded output to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.masked.mgh Saving cluster numbers to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh Saving cluster pval /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh Constructing output annotation Writing annotation /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.annot mri_segstats --seg /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh --exclude 0 --i /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//y.mgh --avgwf /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.658856 $Id: mri_segstats.c,v 1.101 2013/08/20 15:52:54 greve Exp $ cwd cmdline mri_segstats --seg /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh --exclude 0 --i /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//y.mgh --avgwf /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.658856 sysname Linux hostname etsch machine x86_64 user ckuehn UseRobust 0 Loading /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.ocn.mgh Loading /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//y.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 2 segmentations Computing statistics for each segmentation 1 1 153 153.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.y.ocn.dat mri_segstats done mri_convert /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh --frame 0 mri_convert /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) keeping frame 0 writing to /nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again//rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh... Tue Feb 21 17:52:29 CET 2017 Tue Feb 21 17:52:35 CET 2017 mri_glmfit-sim done