The conformed space is an anatomical one, so I’m still not clear what “anatomical space” you want to map it to. What are you trying to do with it? And when you visualize the label in freeview in the volume does it appear in the correct location?

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Sam W
Sent: Friday, June 3, 2022 10:46 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] labels in anatomical space

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Hi Bruce,

Thanks for your help!

I got the label after running mri_annotation2label using the label\lh.aparc.annot file on an individual subject. I always assumed (maybe wrongly) that labels correspond to surfaces and are defined in freesurfer's conformed space.

Best regards,

Sam

On Fri, Jun 3, 2022 at 4:33 PM Fischl, Bruce <BFISCHL@mgh.harvard.edu> wrote:

Hi Sam

We need more information. What do you mean by “freesurfer space”? Is it on an individual subject or fsaverage? Volume or surface? How did you create it?

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Sam W
Sent: Friday, June 3, 2022 9:12 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] labels in anatomical space

        External Email - Use Caution        

Hello!

I have a label in freesurfer space, and I would like it to be in anatomical space. Is this possible?

Best regards,

Sam

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