How many files are in the dicom folder? Try copying one of them to a different folder and running it on that one file (it will only be a test, the output file will not be correct)

On 9/9/14 1:12 PM, Nooshin Zadeh wrote:

Yes. It just hang there. I even let it run for few days! and no outcome.

On Sep 9, 2014 12:19 PM, "Bruce Fischl" <fischl@nmr.mgh.harvard.edu> wrote:

Hi Nooshin

does it just hang there? How long do you let it run?
Bruce
On Tue, 9 Sep 2014, Nooshin Zadeh wrote:

Dear FreeSurfer experts,

I get a new message when I use "mri_convert" command to convert dicom to mgz. I used to apply this command before and there was
no problem. I wonder what is the reason that I get the new message. In addition, it does not create mgz file, and goes to
infinite loop.

mri_convert "/M1/t1_se_ax_5/IM-0004-0001.dcm" "/FS/M1/mri/orig/001.mgz"
mri_convert /M1/t1_se_ax_5/IM-0004-0001.dcm /FS/M1/mri/orig/001.mgz
$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $
reading from /M1/t1_se_ax_5/IM-0004-0001.dcm...
Getting Series No
Scanning Directory
INFO: Found 39 files in /Users/christine/Raw_Data/M226/t1_se_ax_5
INFO: Scanning for Series Number 5INFO: found 37 files in series
INFO: loading series header info.

I appreciate if you can advise me.

Regards,
Nooshin

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer