Mon Jul 7 13:35:39 PDT 2014 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI /usr/local/freesurfer/bin/trac-all -prep -c /home/image/freesurfer/tracula/CIFASDII_T1-DTI/dmrirc.CIFASDII_T1-DTI Subject call1285_CIFASDII_T1_021210 SUBJECTS_DIR /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 image brain Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127973 maxlocks unlimited maxsignal 127973 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16398256 14950412 1447844 0 499444 5823536 -/+ buffers/cache: 8627432 7770824 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-20:35:39-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-20:35:39-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-20:35:39-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-20:35:39-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-20:35:39-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 New invocation of trac-preproc image brain Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127973 maxlocks unlimited maxsignal 127973 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16398256 14951448 1446808 0 499444 5823536 -/+ buffers/cache: 8628468 7769788 Swap: 0 0 0 #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Mon Jul 7 13:35:39 PDT 2014 mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1... Starting DICOMRead2() dcmfile = /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 dcmdir = /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205 Ref Series No = 8 Found 1149 files, checking for dicoms Found 1147 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 3 Vs: 0 0 1 Second Sorting Counting frames nframes = 31 nslices = 37 ndcmfiles = 1147 PE Dir = COL (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- Loading pixel data TR=13000.00, TE=98.50, TI=0.00, flip angle=90.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz... mri_probedicom --i /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 > /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dcminfo.dat cp /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/bvecs /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvecs cp /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/bvals /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvals flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 10.5469 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz x -y z /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz INFO: found /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.mghdti.bvecs /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.mghdti.bvals /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvals eddy_correct /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz 0 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0000 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0001 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0002 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0003 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0004 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0005 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0006 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0007 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0008 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0009 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0010 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0011 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0012 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0013 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0014 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0015 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0016 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0017 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0018 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0019 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0020 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0021 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0022 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0023 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0024 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0025 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0026 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0027 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0028 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0029 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0030 mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs.norot xfmrot /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.ecclog /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs.norot /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs ln -sf /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/data.nii.gz fslroi /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz 0 1 fslmaths /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -Tmean /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz bet /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb_brain_mask.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff #------------------------------------- #@# Intra-subject registration Mon Jul 7 13:40:05 PDT 2014 mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brain.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brain.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brain.mgz... TR=7.78, TE=2.99, TI=450.00, flip angle=12.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz... flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz tkregister2 --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz --targ /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2anat.mat --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz movable volume /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz reg file /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2anatorig.mat -inverse /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2anat.mat Log file is /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat.log Mon Jul 7 13:40:06 PDT 2014 setenv SUBJECTS_DIR /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1 cd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI /usr/local/freesurfer/bin/bbregister --s call1285_CIFASDII_T1_021210 --init-fsl --dti --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat --fslmat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_convert /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii mri_convert /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii... fslregister --s call1285_CIFASDII_T1_021210 --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister --dof 6 --fsvol brainmask.mgz Log file is /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat.fslregister.log Mon Jul 7 13:40:07 PDT 2014 --s call1285_CIFASDII_T1_021210 --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ brain Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brainmask.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/refvol.fslregister.nii mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brainmask.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brainmask.mgz... TR=7.78, TE=2.99, TI=450.00, flip angle=12.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/refvol.fslregister.nii... -------------------------------------- /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI mri_convert /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii... Mov determinant is -10.5469 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI tkregister2_cmdl --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/reg0.2845.dat --regheader --fslregout /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat.fsl.mat0 --s call1285_CIFASDII_T1_021210 --noedit tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii reg file /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/reg0.2845.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.875 0.000 0.000 120.000; 0.000 0.000 3.000 -55.500; 0.000 -1.875 0.000 120.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 1.938; 0.000 0.000 1.000 -13.218; 0.000 -1.000 0.000 -2.140; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 1.938; 0.000 0.000 1.000 -13.218; 0.000 -1.000 0.000 -2.140; 0.000 0.000 0.000 1.000; Determinant 1 subject = call1285_CIFASDII_T1_021210 RegMat --------------------------- 1.000 0.000 0.000 1.938; 0.000 0.000 1.000 -13.218; 0.000 -1.000 0.000 -2.140; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -10.5469, ref det = -1 Mon Jul 7 13:40:09 PDT 2014 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI flirt.fsl -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/refvol.fslregister.nii -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/fslmat0.trans.mat -schedule /usr/local/fsl/etc/flirtsch/xyztrans.sch -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat.fsl.mat0 Mon Jul 7 13:40:15 PDT 2014 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI flirt.fsl -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/refvol.fslregister.nii -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat.fsl.mat -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s call1285_CIFASDII_T1_021210 --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat --fslreg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.001 0.028 9.145; 0.028 -0.033 -0.999 161.453; -0.000 0.999 -0.033 6.991; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii reg file /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii Tmov: -------------------- -1.875 0.000 0.000 120.000; 0.000 0.000 3.000 -55.500; 0.000 -1.875 0.000 120.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -10.5469, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 0.000 0.028 2.170; -0.028 -0.033 0.999 -22.776; 0.001 -0.999 -0.033 -2.205; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.028 2.170; -0.028 -0.033 0.999 -22.776; 0.001 -0.999 -0.033 -2.205; 0.000 0.000 0.000 1.000; Determinant 1 subject = call1285_CIFASDII_T1_021210 RegMat --------------------------- 1.000 0.000 0.028 2.170; -0.028 -0.033 0.999 -22.776; 0.001 -0.999 -0.033 -2.205; 0.000 0.000 0.000 1.000; (standard_in) 1: syntax error (standard_in) 1: illegal character: I (standard_in) 1: illegal character: S (standard_in) 1: illegal character: I (standard_in) 1: illegal character: I (standard_in) 1: illegal character: _ (standard_in) 1: illegal character: T (standard_in) 1: illegal character: _ Started at Mon Jul 7 13:40:07 PDT 2014 Ended at Mon Jul 7 13:40:29 PDT 2014 fslregister Done To check results, run: tkregister2 --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat --surf orig mri_segreg --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --init-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat --out-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1 cd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI mri_segreg --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --init-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat --out-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname brain machine x86_64 user image movvol /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii regfile /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.init.dat subject call1285_CIFASDII_T1_021210 dof 6 outregfile /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1405283659 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.000 0.028 2.170; -0.028 -0.033 0.999 -22.776; 0.001 -0.999 -0.033 -2.205; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.008083 1 -25.0 -25.0 25.0 1.055834 2 -25.0 25.0 -25.0 0.973403 3 -25.0 25.0 25.0 1.039528 4 25.0 -25.0 -25.0 0.995750 5 25.0 -25.0 25.0 1.033727 6 25.0 25.0 -25.0 1.003947 7 25.0 25.0 25.0 1.029881 REL: 8 0.628342 8.140152 1.017519 rel = 0.617523 Initial costs ---------------- Number of surface hits 2159 WM Intensity 1165.9289 +/- 344.2255 Ctx Intensity 1298.2395 +/- 406.2214 Pct Contrast 9.4908 +/- 31.4469 Cost 0.6283 RelCost 0.6175 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9495 0.9495 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9022 0.9022 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.8689 0.8689 0.0 11 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.8553 0.8553 0.0 46 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.8312 0.8312 0.0 113 -4.0000 0.0000 0.0000 -4.0000 0.0000 4.0000 0.8175 0.8175 0.0 122 -4.0000 0.0000 0.0000 0.0000 0.0000 4.0000 0.7988 0.7988 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.7966 0.7966 0.0 284 0.0000 -4.0000 0.0000 0.0000 0.0000 4.0000 0.7732 0.7732 0.0 293 0.0000 -4.0000 0.0000 4.0000 0.0000 4.0000 0.7687 0.7687 0.0 355 0.0000 0.0000 0.0000 -4.0000 0.0000 0.0000 0.7073 0.7073 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6283 0.6283 0.0 Brute Force -------------------------- Min cost was 0.628342 Number of iterations 729 Search time 0.969000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 3 -1.618 0.000 0.000 0.000 0.000 0.000 0.6163860247 4 -1.101 0.000 0.000 0.000 0.000 0.000 0.5897275854 8 -1.083 0.000 0.000 0.000 0.000 0.000 0.5896637853 9 -1.064 0.000 0.000 0.000 0.000 0.000 0.5895556045 10 -0.918 0.000 0.000 0.000 0.000 0.000 0.5886971341 12 -0.974 0.000 0.000 0.000 0.000 0.000 0.5884120990 13 -0.967 0.000 0.000 0.000 0.000 0.000 0.5883154790 14 -0.952 0.000 0.000 0.000 0.000 0.000 0.5881808922 16 -0.948 0.000 0.000 0.000 0.000 0.000 0.5881697719 17 -0.947 0.000 0.000 0.000 0.000 0.000 0.5881696024 25 -0.947 -0.238 0.000 0.000 0.000 0.000 0.5845487484 26 -0.947 -0.256 0.000 0.000 0.000 0.000 0.5844308899 30 -0.947 -0.259 0.000 0.000 0.000 0.000 0.5844258942 38 -0.947 -0.259 0.382 0.000 0.000 0.000 0.5726191519 40 -0.947 -0.259 0.364 0.000 0.000 0.000 0.5724244744 42 -0.947 -0.259 0.328 0.000 0.000 0.000 0.5723473969 43 -0.947 -0.259 0.339 0.000 0.000 0.000 0.5723319717 44 -0.947 -0.259 0.338 0.000 0.000 0.000 0.5723314606 45 -0.947 -0.259 0.337 0.000 0.000 0.000 0.5723311957 53 -0.947 -0.259 0.336 -0.618 0.000 0.000 0.5714622301 58 -0.947 -0.259 0.336 -0.622 0.000 0.000 0.5714382924 59 -0.947 -0.259 0.336 -0.676 0.000 0.000 0.5711858492 62 -0.947 -0.259 0.336 -0.674 0.000 0.000 0.5711804487 63 -0.947 -0.259 0.336 -0.669 0.000 0.000 0.5711778541 77 -0.947 -0.259 0.336 -0.669 -0.013 0.000 0.5711600025 79 -0.947 -0.259 0.336 -0.669 -0.010 0.000 0.5711593892 83 -0.947 -0.259 0.336 -0.669 -0.010 1.000 0.5675923769 88 -0.947 -0.259 0.336 -0.669 -0.010 1.076 0.5672101598 90 -0.947 -0.259 0.336 -0.669 -0.010 1.067 0.5671958665 94 -0.947 -0.259 0.336 -0.669 -0.010 1.069 0.5671950050 95 -0.947 -0.259 0.336 -0.669 -0.010 1.070 0.5671947880 103 -1.054 -0.259 0.336 -0.669 -0.010 1.070 0.5662886551 105 -1.014 -0.259 0.336 -0.669 -0.010 1.070 0.5656786158 107 -1.010 -0.259 0.336 -0.669 -0.010 1.070 0.5656720187 114 -1.009 -0.877 0.336 -0.669 -0.010 1.070 0.5618480052 118 -1.009 -0.766 0.336 -0.669 -0.010 1.070 0.5615042993 119 -1.009 -0.787 0.336 -0.669 -0.010 1.070 0.5614900830 122 -1.009 -0.800 0.336 -0.669 -0.010 1.070 0.5614816599 123 -1.009 -0.799 0.336 -0.669 -0.010 1.070 0.5614815873 131 -1.009 -0.799 0.519 -0.669 -0.010 1.070 0.5585523979 132 -1.009 -0.799 0.523 -0.669 -0.010 1.070 0.5582808172 133 -1.009 -0.799 0.597 -0.669 -0.010 1.070 0.5562875067 134 -1.009 -0.799 0.587 -0.669 -0.010 1.070 0.5562151759 135 -1.009 -0.799 0.586 -0.669 -0.010 1.070 0.5562151101 141 -1.009 -0.799 0.586 -1.287 -0.010 1.070 0.5553544479 144 -1.009 -0.799 0.586 -1.433 -0.010 1.070 0.5546087718 145 -1.009 -0.799 0.586 -1.524 -0.010 1.070 0.5528397799 146 -1.009 -0.799 0.586 -1.579 -0.010 1.070 0.5527516017 147 -1.009 -0.799 0.586 -1.558 -0.010 1.070 0.5524816496 148 -1.009 -0.799 0.586 -1.553 -0.010 1.070 0.5524594859 149 -1.009 -0.799 0.586 -1.547 -0.010 1.070 0.5524553479 151 -1.009 -0.799 0.586 -1.549 -0.010 1.070 0.5524530923 160 -1.009 -0.799 0.586 -1.549 0.055 1.070 0.5519915717 162 -1.009 -0.799 0.586 -1.549 0.039 1.070 0.5519166729 163 -1.009 -0.799 0.586 -1.549 0.034 1.070 0.5519140718 164 -1.009 -0.799 0.586 -1.549 0.035 1.070 0.5519140412 174 -1.009 -0.799 0.586 -1.549 0.035 1.111 0.5518473719 175 -1.009 -0.799 0.586 -1.549 0.035 1.105 0.5518402376 176 -1.009 -0.799 0.586 -1.549 0.035 1.100 0.5518374335 177 -1.009 -0.799 0.586 -1.549 0.035 1.099 0.5518366482 180 -1.009 -0.799 0.586 -1.549 0.035 1.097 0.5518365729 191 -1.008 -0.799 0.586 -1.549 0.035 1.097 0.5518365650 203 -1.008 -0.742 0.586 -1.549 0.035 1.097 0.5504380825 204 -1.008 -0.732 0.586 -1.549 0.035 1.097 0.5504206647 205 -1.008 -0.734 0.586 -1.549 0.035 1.097 0.5504144562 217 -1.008 -0.734 0.589 -1.549 0.035 1.097 0.5504070621 218 -1.008 -0.734 0.590 -1.549 0.035 1.097 0.5504065747 229 -1.008 -0.734 0.590 -1.525 0.035 1.097 0.5502157118 231 -1.008 -0.734 0.590 -1.523 0.035 1.097 0.5502149811 242 -1.008 -0.734 0.590 -1.523 0.033 1.097 0.5502140996 252 -1.008 -0.734 0.590 -1.523 0.033 1.166 0.5496118818 266 -1.008 -0.731 0.590 -1.521 0.033 1.170 0.5495766673 269 -1.008 -0.731 0.590 -1.521 0.033 1.170 0.5495760141 282 -1.006 -0.731 0.590 -1.521 0.033 1.170 0.5495746804 292 -1.006 -0.731 0.590 -1.521 0.033 1.169 0.5495665247 294 -1.006 -0.731 0.590 -1.521 0.033 1.159 0.5495628732 295 -1.006 -0.731 0.590 -1.521 0.033 1.164 0.5495578875 307 -1.006 -0.731 0.593 -1.521 0.033 1.164 0.5495534410 319 -1.006 -0.731 0.593 -1.511 0.033 1.164 0.5495222773 320 -1.006 -0.731 0.593 -1.512 0.033 1.164 0.5495215833 321 -1.006 -0.731 0.593 -1.513 0.033 1.164 0.5495212621 330 -1.006 -0.731 0.593 -1.513 0.039 1.164 0.5494907158 332 -1.006 -0.731 0.593 -1.513 0.053 1.164 0.5494847126 333 -1.006 -0.731 0.593 -1.513 0.047 1.164 0.5494726518 343 -1.005 -0.727 0.593 -1.511 0.047 1.168 0.5494321809 345 -1.005 -0.724 0.593 -1.510 0.046 1.171 0.5494182970 346 -1.005 -0.724 0.593 -1.510 0.046 1.171 0.5494175476 347 -1.005 -0.723 0.593 -1.509 0.046 1.172 0.5494172134 349 -1.005 -0.723 0.593 -1.510 0.046 1.172 0.5494168449 362 -1.006 -0.723 0.593 -1.510 0.046 1.172 0.5494164949 375 -1.006 -0.723 0.593 -1.510 0.046 1.170 0.5494164012 386 -1.006 -0.723 0.595 -1.510 0.046 1.170 0.5494134574 387 -1.006 -0.723 0.596 -1.510 0.046 1.170 0.5494134191 412 -1.006 -0.723 0.596 -1.510 0.045 1.170 0.5494130574 413 -1.006 -0.723 0.596 -1.510 0.044 1.170 0.5494130158 422 -1.006 -0.723 0.596 -1.509 0.044 1.171 0.5494108172 423 -1.006 -0.722 0.596 -1.509 0.044 1.171 0.5494105260 424 -1.006 -0.722 0.596 -1.509 0.044 1.171 0.5494104659 425 -1.006 -0.722 0.596 -1.509 0.044 1.171 0.5494103700 Powell done niters = 4 Computing relative cost 0 -25.0 -25.0 -25.0 1.037807 1 -25.0 -25.0 25.0 1.047410 2 -25.0 25.0 -25.0 0.987251 3 -25.0 25.0 25.0 1.023775 4 25.0 -25.0 -25.0 1.025682 5 25.0 -25.0 25.0 1.039706 6 25.0 25.0 -25.0 0.987953 7 25.0 25.0 25.0 1.035027 REL: 8 0.549410 8.184611 1.023076 rel = 0.537018 Number of iterations 4 Min cost was 0.549410 Number of FunctionCalls 428 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.623000 sec Parameters at optimum (transmm) -1.00633 -0.72212 0.59638 Parameters at optimum (rotdeg) -1.50913 0.04380 1.17117 Final costs ---------------- Number of surface hits 2146 WM Intensity 1148.7661 +/- 355.2620 Ctx Intensity 1285.0312 +/- 400.9110 Pct Contrast 10.3213 +/- 31.5715 Cost 0.5494 RelCost 0.6175 Reg at min cost was 1.000 0.001 0.008 1.628; -0.008 -0.060 0.998 -23.499; 0.001 -0.998 -0.060 -1.010; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat, type = 14 Original Reg 1.000 0.000 0.028 2.170; -0.028 -0.033 0.999 -22.776; 0.001 -0.999 -0.033 -2.205; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.000 0.020 0.541; -0.020 0.026 0.001 0.723; 0.000 -0.001 0.026 -1.195; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.996478 Computing change in rh position Surface RMS Diff (mm) 1.857868 3.583726 mri_segreg done mri_segreg --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --init-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat --out-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1 cd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI mri_segreg --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii --init-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat --out-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname brain machine x86_64 user image movvol /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/template.nii regfile /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/tmp.bbregister.2810/bbr.pass1.dat subject call1285_CIFASDII_T1_021210 dof 6 outregfile /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1405202908 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.001 0.008 1.628; -0.008 -0.060 0.998 -23.499; 0.001 -0.998 -0.060 -1.010; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.004887 1 -25.0 -25.0 25.0 1.037319 2 -25.0 25.0 -25.0 0.988745 3 -25.0 25.0 25.0 0.996637 4 25.0 -25.0 -25.0 1.007145 5 25.0 -25.0 25.0 1.032500 6 25.0 25.0 -25.0 1.000085 7 25.0 25.0 25.0 1.022318 REL: 8 0.577403 8.089635 1.011204 rel = 0.571005 Initial costs ---------------- Number of surface hits 215338 WM Intensity 1144.4600 +/- 351.6420 Ctx Intensity 1284.2980 +/- 395.1684 Pct Contrast 10.6762 +/- 31.4686 Cost 0.5774 RelCost 0.5710 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.5594 0.5594 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.5593 0.5593 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.5580 0.5580 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.5565 0.5565 0.0 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.5563 0.5563 0.0 14 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1000 0.5560 0.5560 0.0 15 -0.1000 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.5559 0.5559 0.0 16 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.5546 0.5546 0.0 17 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.1000 0.5539 0.5539 0.0 94 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.5531 0.5531 0.0 97 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.0000 0.5526 0.5526 0.0 98 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.1000 0.5521 0.5521 0.0 107 -0.1000 0.0000 -0.1000 0.1000 0.1000 0.1000 0.5518 0.5518 0.0 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.5513 0.5513 0.0 133 -0.1000 0.0000 0.0000 0.1000 0.1000 0.0000 0.5507 0.5507 0.0 134 -0.1000 0.0000 0.0000 0.1000 0.1000 0.1000 0.5505 0.5505 0.0 213 -0.1000 0.1000 0.0000 0.1000 0.1000 -0.1000 0.5504 0.5504 0.0 214 -0.1000 0.1000 0.0000 0.1000 0.1000 0.0000 0.5493 0.5493 0.0 461 0.0000 0.1000 0.1000 -0.1000 -0.1000 0.1000 0.5478 0.5478 0.0 Brute Force -------------------------- Min cost was 0.547799 Number of iterations 729 Search time 0.962000 sec Parameters at best (transmm, rotdeg) 0.000 0.100 0.100 -0.100 -0.100 0.100 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0.1 2 0.1 3 -0.1 4 -0.1 5 0.1 7 -0.008 0.100 0.100 -0.100 -0.100 0.100 0.5794177700 8 -0.010 0.100 0.100 -0.100 -0.100 0.100 0.5794173872 9 -0.011 0.100 0.100 -0.100 -0.100 0.100 0.5794172923 16 -0.016 0.100 0.100 -0.100 -0.100 0.100 0.5794172696 23 -0.016 0.203 0.100 -0.100 -0.100 0.100 0.5791531437 24 -0.016 0.200 0.100 -0.100 -0.100 0.100 0.5791486183 25 -0.016 0.182 0.100 -0.100 -0.100 0.100 0.5791207740 28 -0.016 0.184 0.100 -0.100 -0.100 0.100 0.5791202148 30 -0.016 0.190 0.100 -0.100 -0.100 0.100 0.5791145114 32 -0.016 0.188 0.100 -0.100 -0.100 0.100 0.5791075366 33 -0.016 0.187 0.100 -0.100 -0.100 0.100 0.5791065790 39 -0.016 0.187 -0.518 -0.100 -0.100 0.100 0.5784179768 41 -0.016 0.187 -0.248 -0.100 -0.100 0.100 0.5769385093 42 -0.016 0.187 -0.238 -0.100 -0.100 0.100 0.5769317808 44 -0.016 0.187 -0.232 -0.100 -0.100 0.100 0.5769284903 45 -0.016 0.187 -0.231 -0.100 -0.100 0.100 0.5769283244 48 -0.016 0.187 -0.231 0.900 -0.100 0.100 0.5647765584 53 -0.016 0.187 -0.231 1.125 -0.100 0.100 0.5639938358 54 -0.016 0.187 -0.231 1.167 -0.100 0.100 0.5639259318 67 -0.016 0.187 -0.231 1.167 -0.030 0.100 0.5638265058 68 -0.016 0.187 -0.231 1.167 -0.031 0.100 0.5638261492 69 -0.016 0.187 -0.231 1.167 -0.037 0.100 0.5638239604 72 -0.016 0.187 -0.231 1.167 -0.041 0.100 0.5638234446 81 -0.016 0.187 -0.231 1.167 -0.041 0.133 0.5637765401 82 -0.016 0.187 -0.231 1.167 -0.041 0.171 0.5637729791 84 -0.016 0.187 -0.231 1.167 -0.041 0.154 0.5637671490 85 -0.016 0.187 -0.231 1.167 -0.041 0.153 0.5637633130 86 -0.016 0.187 -0.231 1.167 -0.041 0.146 0.5637603868 87 -0.016 0.187 -0.231 1.167 -0.041 0.149 0.5637561564 97 0.037 0.187 -0.231 1.167 -0.041 0.149 0.5636836456 98 0.030 0.187 -0.231 1.167 -0.041 0.149 0.5636790572 99 0.026 0.187 -0.231 1.167 -0.041 0.149 0.5636775621 100 0.023 0.187 -0.231 1.167 -0.041 0.149 0.5636775068 102 0.024 0.187 -0.231 1.167 -0.041 0.149 0.5636774527 116 0.024 0.189 -0.231 1.167 -0.041 0.149 0.5636757922 117 0.024 0.190 -0.231 1.167 -0.041 0.149 0.5636710526 125 0.024 0.190 -0.101 1.167 -0.041 0.149 0.5632798404 141 0.024 0.190 -0.102 1.168 -0.041 0.149 0.5632779910 142 0.024 0.190 -0.102 1.169 -0.041 0.149 0.5632757506 150 0.024 0.190 -0.102 1.169 -0.012 0.149 0.5632298237 153 0.024 0.190 -0.102 1.169 -0.011 0.149 0.5632294746 154 0.024 0.190 -0.102 1.169 -0.010 0.149 0.5632294058 174 0.021 0.190 -0.102 1.169 -0.010 0.149 0.5632271676 176 0.018 0.190 -0.102 1.169 -0.010 0.149 0.5632266203 186 0.017 0.207 -0.102 1.169 -0.010 0.149 0.5632052226 187 0.017 0.215 -0.102 1.169 -0.010 0.149 0.5631966363 188 0.017 0.231 -0.102 1.169 -0.010 0.149 0.5631861529 190 0.017 0.225 -0.102 1.169 -0.010 0.149 0.5631769926 192 0.017 0.228 -0.102 1.169 -0.010 0.149 0.5631768122 201 0.017 0.228 -0.074 1.169 -0.010 0.149 0.5631429904 203 0.017 0.228 -0.067 1.169 -0.010 0.149 0.5631415036 204 0.017 0.228 -0.068 1.169 -0.010 0.149 0.5631413357 205 0.017 0.228 -0.069 1.169 -0.010 0.149 0.5631412237 215 0.017 0.228 -0.069 1.212 -0.010 0.149 0.5631219446 216 0.017 0.228 -0.069 1.202 -0.010 0.149 0.5631180132 219 0.017 0.228 -0.069 1.204 -0.010 0.149 0.5631165532 220 0.017 0.228 -0.069 1.205 -0.010 0.149 0.5631153987 227 0.017 0.228 -0.069 1.205 -0.009 0.149 0.5631135407 228 0.017 0.228 -0.069 1.205 0.026 0.149 0.5630930211 232 0.017 0.228 -0.069 1.205 0.023 0.149 0.5630926472 245 0.017 0.228 -0.069 1.205 0.024 0.145 0.5630911833 246 0.017 0.228 -0.069 1.205 0.024 0.146 0.5630897007 247 0.017 0.228 -0.069 1.205 0.024 0.147 0.5630883245 248 0.009 0.266 -0.036 1.240 0.059 0.146 0.5630882682 256 0.014 0.228 -0.069 1.205 0.024 0.147 0.5630881787 257 0.015 0.228 -0.069 1.205 0.024 0.147 0.5630881529 267 0.015 0.234 -0.069 1.205 0.024 0.147 0.5630872803 268 0.015 0.232 -0.069 1.205 0.024 0.147 0.5630805280 277 0.015 0.232 -0.039 1.205 0.024 0.147 0.5630723592 279 0.015 0.232 -0.050 1.205 0.024 0.147 0.5630718137 281 0.015 0.232 -0.049 1.205 0.024 0.147 0.5630717981 291 0.015 0.232 -0.049 1.202 0.024 0.147 0.5630682086 293 0.015 0.232 -0.049 1.203 0.024 0.147 0.5630655065 301 0.015 0.232 -0.049 1.203 0.038 0.147 0.5630562491 303 0.015 0.232 -0.049 1.203 0.039 0.147 0.5630559810 304 0.015 0.232 -0.049 1.203 0.040 0.147 0.5630558485 314 0.015 0.232 -0.049 1.203 0.041 0.148 0.5630543990 318 0.015 0.232 -0.049 1.203 0.041 0.151 0.5630537396 320 0.015 0.232 -0.049 1.203 0.041 0.152 0.5630529213 321 0.013 0.237 -0.029 1.201 0.058 0.157 0.5630372926 387 0.005 0.233 -0.024 1.202 0.058 0.152 0.5630318736 388 0.005 0.233 -0.024 1.202 0.055 0.152 0.5630306882 389 0.005 0.233 -0.024 1.202 0.053 0.152 0.5630303800 399 0.005 0.233 -0.024 1.202 0.053 0.160 0.5630296771 400 0.005 0.233 -0.024 1.202 0.053 0.159 0.5630230464 412 0.004 0.233 -0.024 1.202 0.053 0.159 0.5630227927 437 0.004 0.233 -0.023 1.202 0.053 0.159 0.5630221042 438 0.004 0.233 -0.021 1.202 0.053 0.159 0.5630219074 440 0.004 0.233 -0.022 1.202 0.053 0.159 0.5630218792 486 0.003 0.233 -0.021 1.202 0.054 0.159 0.5630218563 487 0.003 0.233 -0.021 1.202 0.054 0.159 0.5630218260 493 0.003 0.233 -0.021 1.202 0.054 0.159 0.5630218257 570 0.003 0.233 -0.021 1.202 0.054 0.159 0.5630218210 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.004533 1 -25.0 -25.0 25.0 1.036427 2 -25.0 25.0 -25.0 0.988685 3 -25.0 25.0 25.0 1.003146 4 25.0 -25.0 -25.0 1.003439 5 25.0 -25.0 25.0 1.026177 6 25.0 25.0 -25.0 1.010337 7 25.0 25.0 25.0 1.020084 REL: 8 0.563022 8.092828 1.011604 rel = 0.556564 Number of iterations 6 Min cost was 0.563022 Number of FunctionCalls 571 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 31.484000 sec Parameters at optimum (transmm) 0.00332 0.23328 -0.02082 Parameters at optimum (rotdeg) 1.20163 0.05395 0.15881 Final costs ---------------- Number of surface hits 216306 WM Intensity 1141.2609 +/- 344.3086 Ctx Intensity 1290.4350 +/- 395.7329 Pct Contrast 11.2653 +/- 31.3214 Cost 0.5630 RelCost 0.5710 Reg at min cost was 1.000 -0.000 0.005 1.695; -0.005 -0.039 0.999 -23.235; 0.000 -0.999 -0.039 -1.525; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.001 0.008 1.628; -0.008 -0.060 0.998 -23.499; 0.001 -0.998 -0.060 -1.010; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.001 0.003 -0.067; -0.003 -0.021 -0.001 -0.264; 0.001 0.001 -0.021 0.515; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.876610 Computing change in rh position Surface RMS Diff (mm) 0.901981 2.136238 mri_segreg done tkregister2_cmdl --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz reg file /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 -0.000 0.005 1.695; -0.005 -0.039 0.999 -23.235; 0.000 -0.999 -0.039 -1.525; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz Tmov: -------------------- -1.875 0.000 0.000 120.000; 0.000 0.000 3.000 -55.500; 0.000 -1.875 0.000 120.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 -0.000 0.005 1.695; -0.005 -0.039 0.999 -23.235; 0.000 -0.999 -0.039 -1.525; 0.000 0.000 0.000 1.000; Determinant 1 subject = call1285_CIFASDII_T1_021210 RegMat --------------------------- 1.000 -0.000 0.005 1.695; -0.005 -0.039 0.999 -23.235; 0.000 -0.999 -0.039 -1.525; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -10.5469, ref det = -1 Cleaning up Started at Mon Jul 7 13:40:06 PDT 2014 Ended at Mon Jul 7 13:41:14 PDT 2014 BBR-Run-Time-Sec 68 bbregister Done To check results, run: tkregister2 --mov /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.mat -inverse /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -concat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2diff.bbr.mat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2anatorig.mat convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2anat.bbr.mat -inverse /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Mon Jul 7 13:41:14 PDT 2014 flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_mni.nii.gz -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2anat.mat -inverse /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat -concat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2diff.bbr.mat -inverse /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2mni.mat -concat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2anatorig.mat -inverse /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Mon Jul 7 13:42:26 PDT 2014 mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname brain machine x86_64 user image input /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 368681 values in range Counting number of voxels Found 368681 voxels in final mask mri_binarize done mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname brain machine x86_64 user image input /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 392069 values in range Counting number of voxels Found 392069 voxels in final mask mri_binarize done mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname brain machine x86_64 user image input /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 4516 values in range Counting number of voxels Found 4516 voxels in final mask mri_binarize done mri_aparc2aseg --s call1285_CIFASDII_T1_021210 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1 subject call1285_CIFASDII_T1_021210 outvol /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/surf/lh.white Reading lh pial surface /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/surf/lh.pial Loading lh annotations from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/surf/rh.white Reading rh pial surface /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/surf/rh.pial Loading rh annotations from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/ribbon.mgz Loading filled from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 849993 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 14 clusters 0 k 1.000000 1 k 1.000000 2 k 5.000000 3 k 1.000000 4 k 1.000000 5 k 1.000000 6 k 4.000000 7 k 1.000000 8 k 1.000000 9 k 1.000000 10 k 1.000000 11 k 1.000000 12 k 1.000000 13 k 609.000000 Fixing Parahip RH WM Found 1 clusters 0 k 745.000000 Writing output aseg to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline mri_binarize --i /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex.nii.gz sysname Linux hostname brain machine x86_64 user image input /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 506242 values in range Counting number of voxels Found 506242 voxels in final mask mri_binarize done mri_binarize --i /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline mri_binarize --i /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname brain machine x86_64 user image input /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 736750 values in range Counting number of voxels Found 736750 voxels in final mask mri_binarize done mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 16 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline mri_binarize --i /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz --match 16 --o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname brain machine x86_64 user image input /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 16667 values in range Counting number of voxels Found 16667 voxels in final mask mri_binarize done fslmaths /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm.nii.gz -add /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/Brain-Stem.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brainmask.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brainmask.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/brainmask.mgz... TR=7.78, TE=2.99, TI=450.00, flip angle=12.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/notventricles.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1/call1285_CIFASDII_T1_021210/mri/aparc+aseg.mgz... TR=7.78, TE=2.99, TI=450.00, flip angle=12.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter++.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter++.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter++.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/White-Matter++.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/notventricles.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/notventricles.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/notventricles.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/notventricles.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/notventricles.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/cortex.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm+bs.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg_mask.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz -k /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_snr.txt flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lowb_brain_mask.nii.gz -ref /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/brain_anat_orig.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Mon Jul 7 13:45:17 PDT 2014 dtifit -k /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz -m /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs -b /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvals -o /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit 0 128 0 128 0 37 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat flirt -in /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Mon Jul 7 13:45:24 PDT 2014 /usr/local/freesurfer/bin/dmri_train --outdir /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.call1285_CIFASDII_T1_021210.1753.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_FA.nii.gz --cptdir /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.call1285_CIFASDII_T1_021210.1753.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_FA.nii.gz --cptdir /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff --reg /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname brain machine x86_64 user image Output directory: /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni Output directory in test subject's space: /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.call1285_CIFASDII_T1_021210.1753.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dtifit_FA.nii.gz Loading affine registration from /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 364 streamlines for straying off mask INFO: Rejected 83 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 7968 total streamlines (min/mean/max length: 59/99/149) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4569 non-truncated streamlines (min/mean/max length: 59/99/149) INFO: Center of mass of start points: (97+/-3, 98+/-6, 39+/-12) INFO: Center of mass of midpoints: (111+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 39835 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0291819 INFO: Points where local peeks in curvature occur are 100 104 53 (curv = 0.0558601) 110 110 70 (curv = 0.0488787) 113 110 81 (curv = 0.0293055) 116 108 101 (curv = 0.0589088) 114 104 116 (curv = 0.0451263) 111 104 125 (curv = 0.0415024) INFO: Intermediate dominant points are 100 100 38 100 104 53 110 110 70 116 108 101 111 104 125 113 104 142 INFO: Final dominant points are 100 100 38 100 104 53 110 110 70 116 108 101 111 104 125 113 104 142 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 100 38 102 105 57 112 110 77 115 109 98 113 104 117 113 104 142 INFO: Distances between consecutive points are 20 23 21 20 25 INFO: Selected control points in test subject's space are 68 57 0 69 61 5 74 65 10 75 66 16 74 66 22 74 68 29 INFO: Distances between consecutive points in test subject's space are 6 8 6 6 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0297837 INFO: Points where local peeks in curvature occur are 111 111 72 (curv = 0.0540469) 113 111 81 (curv = 0.0308207) 113 110 85 (curv = 0.0349174) 114 109 105 (curv = 0.0460778) 115 106 113 (curv = 0.0426337) 114 103 119 (curv = 0.0445948) 114 103 125 (curv = 0.0572221) INFO: Intermediate dominant points are 99 101 39 104 107 60 111 111 72 114 109 105 114 103 125 108 106 139 INFO: Final dominant points are 99 101 39 105 108 62 111 111 72 114 109 105 114 103 125 108 106 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 101 39 103 107 59 112 111 77 114 110 96 115 105 114 108 106 139 INFO: Distances between consecutive points are 21 21 19 19 26 INFO: Selected control points in test subject's space are 67 57 0 69 62 5 74 65 10 75 67 15 75 66 21 71 69 28 INFO: Distances between consecutive points in test subject's space are 7 8 5 6 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.028762 INFO: Points where local peeks in curvature occur are 102 104 55 (curv = 0.0309705) 110 109 70 (curv = 0.0457046) 114 109 94 (curv = 0.0324087) 115 107 100 (curv = 0.0430459) 114 107 105 (curv = 0.0503515) 115 103 116 (curv = 0.0564264) 114 103 124 (curv = 0.0415234) INFO: Intermediate dominant points are 99 100 39 110 109 70 113 109 81 115 107 100 115 103 116 113 103 139 INFO: Final dominant points are 99 100 39 110 109 70 114 109 89 115 107 100 115 103 116 113 103 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 100 39 104 106 60 113 109 80 115 107 100 114 103 119 113 103 139 INFO: Distances between consecutive points are 22 22 20 19 20 INFO: Selected control points in test subject's space are 67 57 0 70 62 6 74 65 11 75 66 17 74 66 22 74 67 28 INFO: Distances between consecutive points in test subject's space are 8 7 6 5 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0317911 INFO: Points where local peeks in curvature occur are 100 105 52 (curv = 0.0393767) 110 111 69 (curv = 0.0441579) 113 109 106 (curv = 0.0658377) 114 109 110 (curv = 0.0533619) 114 104 118 (curv = 0.0793576) INFO: Intermediate dominant points are 99 102 39 100 105 52 110 111 69 113 109 106 114 104 118 110 108 138 INFO: Final dominant points are 99 102 39 100 105 52 110 111 69 113 109 106 114 104 118 110 108 138 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 102 39 104 108 58 113 111 79 114 110 98 115 105 116 110 108 138 INFO: Distances between consecutive points are 21 23 19 19 23 INFO: Selected control points in test subject's space are 67 58 0 70 62 5 74 66 11 75 67 16 75 66 21 72 70 27 INFO: Distances between consecutive points in test subject's space are 7 8 5 5 8 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 100 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0318206 INFO: Points where local peeks in curvature occur are 99 105 51 (curv = 0.0690745) 109 111 67 (curv = 0.0440263) 113 112 79 (curv = 0.0491423) 115 112 96 (curv = 0.0612937) 111 105 124 (curv = 0.0611553) 108 101 133 (curv = 0.0854611) INFO: Intermediate dominant points are 99 102 41 105 109 61 113 112 79 115 112 96 108 101 133 108 106 145 INFO: Final dominant points are 99 102 41 109 111 68 113 112 79 115 112 96 108 101 133 108 106 145 INFO: Selected control points are 99 102 41 107 111 68 113 111 79 115 111 97 109 102 131 108 106 145 INFO: Distances between consecutive points are 30 13 18 36 15 INFO: Selected control points in test subject's space are 67 58 1 71 65 8 74 66 11 75 67 16 72 66 26 71 70 29 INFO: Distances between consecutive points in test subject's space are 11 4 5 10 5 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 60.061 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 565 streamlines for straying off mask INFO: Rejected 79 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 8621 total streamlines (min/mean/max length: 58/99/141) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5450 non-truncated streamlines (min/mean/max length: 58/98/141) INFO: Center of mass of start points: (82+/-3, 97+/-6, 41+/-14) INFO: Center of mass of midpoints: (68+/-3, 110+/-4, 79+/-7) INFO: Center of mass of end points: (68+/-7, 104+/-10, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 45330 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0323471 INFO: Points where local peeks in curvature occur are 79 102 58 (curv = 0.0511195) 75 108 65 (curv = 0.0472731) 68 110 76 (curv = 0.0643818) 65 108 110 (curv = 0.0461134) 67 101 126 (curv = 0.0782472) INFO: Intermediate dominant points are 80 95 43 79 102 58 68 110 76 65 108 110 67 101 126 66 105 142 INFO: Final dominant points are 80 95 43 79 102 58 68 110 76 65 108 110 67 101 126 66 105 142 INFO: Selected control points are 80 95 43 79 103 58 68 110 76 65 108 109 68 101 125 66 105 142 INFO: Distances between consecutive points are 17 22 33 18 18 INFO: Selected control points in test subject's space are 58 55 2 58 61 5 52 66 10 51 68 19 52 66 24 51 70 28 INFO: Distances between consecutive points in test subject's space are 7 9 9 5 6 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 65.968 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from 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Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 63 streamlines for straying off mask INFO: Rejected 32 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3491 total streamlines (min/mean/max length: 53/91/143) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1545 non-truncated streamlines (min/mean/max length: 53/98/143) INFO: Center of mass of start points: (135+/-8, 136+/-5, 41+/-9) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (114+/-13, 46+/-12, 70+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38173 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 83 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0342832 INFO: Points where local peeks in curvature occur are 131 118 56 (curv = 0.0487459) 130 115 57 (curv = 0.0517159) 132 98 62 (curv = 0.0453498) 130 87 64 (curv = 0.0533543) 122 75 72 (curv = 0.0775938) INFO: Intermediate dominant points are 141 140 49 130 115 57 130 87 64 122 75 72 116 56 73 INFO: Final dominant points are 141 140 49 130 115 57 130 87 64 122 75 72 116 56 73 INFO: Selected control points are 141 140 49 130 114 56 131 88 64 122 75 71 116 56 73 INFO: Distances between consecutive points are 29 27 17 20 INFO: Selected control points in test subject's space are 88 76 1 82 65 4 83 53 8 78 47 11 75 38 12 INFO: Distances between consecutive points in test subject's space are 13 13 8 10 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 12.24 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 164 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1976 total streamlines (min/mean/max length: 52/91/133) Processing pathway 4 of 18... Matching streamline ends INFO: Have 876 non-truncated streamlines (min/mean/max length: 57/98/124) INFO: Center of mass of start points: (46+/-8, 140+/-6, 42+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-11, 47+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 27734 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0331276 INFO: Points where local peeks in curvature occur are 49 118 56 (curv = 0.0592753) 48 110 59 (curv = 0.0495798) 46 103 59 (curv = 0.0857214) 49 83 67 (curv = 0.0553521) 57 69 76 (curv = 0.0497464) INFO: Intermediate dominant points are 41 138 50 46 103 59 49 83 67 57 66 76 72 44 76 INFO: Final dominant points are 41 138 50 46 103 59 49 83 67 62 56 76 72 44 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 138 50 48 114 58 47 91 65 57 69 76 72 44 76 INFO: Distances between consecutive points are 26 24 27 29 INFO: Selected control points in test subject's space are 40 78 1 43 67 4 42 56 8 47 46 12 54 34 14 INFO: Distances between consecutive points in test subject's space are 12 12 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.033736 INFO: Points where local peeks in curvature occur are 49 120 55 (curv = 0.109315) 48 109 58 (curv = 0.0417357) 46 103 59 (curv = 0.048783) 46 88 66 (curv = 0.0418986) 56 65 74 (curv = 0.0477614) INFO: Intermediate dominant points are 40 140 50 49 120 55 46 103 59 56 65 74 68 38 68 INFO: Final dominant points are 40 140 50 49 120 55 46 103 59 56 65 74 68 38 68 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 140 50 48 116 57 46 93 63 53 70 73 68 38 68 INFO: Distances between consecutive points are 26 24 26 36 INFO: Selected control points in test subject's space are 39 79 1 43 67 4 42 57 7 45 47 11 52 30 12 INFO: Distances between consecutive points in test subject's space are 13 10 11 18 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0256392 INFO: Points where local peeks in curvature occur are 50 127 51 (curv = 0.0576302) 50 113 58 (curv = 0.0335179) 49 99 63 (curv = 0.0291702) 48 90 65 (curv = 0.0411411) 48 87 66 (curv = 0.0400026) 50 81 69 (curv = 0.0331996) 55 72 72 (curv = 0.0403972) INFO: Intermediate dominant points are 49 138 51 50 113 58 48 90 65 55 72 72 68 47 66 INFO: Final dominant points are 49 138 51 50 113 58 48 90 65 55 72 72 68 47 66 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 49 138 51 50 118 56 49 96 63 53 75 71 68 47 66 INFO: Distances between consecutive points are 21 23 23 32 INFO: Selected control points in test subject's space are 44 78 1 44 68 4 43 58 7 45 49 10 52 34 11 INFO: Distances between consecutive points in test subject's space are 10 10 10 17 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0311956 INFO: Points where local peeks in curvature occur are 51 116 56 (curv = 0.0549598) 48 106 59 (curv = 0.0513879) 49 99 62 (curv = 0.0424603) 48 90 64 (curv = 0.0316304) 48 86 66 (curv = 0.0456009) 53 74 71 (curv = 0.042228) 60 61 71 (curv = 0.055382) INFO: Intermediate dominant points are 49 138 50 51 116 56 48 86 66 60 61 71 70 51 62 INFO: Final dominant points are 49 138 50 51 116 56 48 86 66 60 61 71 70 51 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 138 50 51 116 56 48 94 63 54 72 71 70 51 62 INFO: Distances between consecutive points are 23 23 24 28 INFO: Selected control points in test subject's space are 44 77 1 44 67 4 43 57 7 45 47 11 53 36 10 INFO: Distances between consecutive points in test subject's space are 10 10 11 14 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.034699 INFO: Points where local peeks in curvature occur are 49 120 56 (curv = 0.080402) 48 86 68 (curv = 0.0453958) 50 80 70 (curv = 0.037192) 56 69 77 (curv = 0.0671324) INFO: Intermediate dominant points are 39 142 50 49 120 56 48 86 68 56 69 77 69 43 75 INFO: Final dominant points are 39 142 50 49 120 56 48 86 68 56 69 77 69 43 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 39 142 50 49 118 57 48 93 66 56 69 77 69 43 75 INFO: Distances between consecutive points are 27 27 28 29 INFO: Selected control points in test subject's space are 39 80 0 43 68 4 43 57 8 46 46 13 52 33 14 INFO: Distances between consecutive points in test subject's space are 13 12 12 14 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0291727 INFO: Points where local peeks in curvature occur are 51 116 56 (curv = 0.0500595) 49 108 58 (curv = 0.046204) 48 86 65 (curv = 0.0468778) 55 70 71 (curv = 0.0492683) INFO: Intermediate dominant points are 49 138 50 51 116 56 48 86 65 55 70 71 69 52 62 INFO: Final dominant points are 49 138 50 51 116 56 48 86 65 55 70 71 69 52 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 138 50 51 117 56 48 95 62 53 73 70 69 52 62 INFO: Distances between consecutive points are 22 23 24 28 INFO: Selected control points in test subject's space are 44 77 1 44 68 4 43 58 7 45 48 10 52 36 9 INFO: Distances between consecutive points in test subject's space are 9 10 11 14 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0340845 INFO: Points where local peeks in curvature occur are 49 122 55 (curv = 0.0747322) 48 103 62 (curv = 0.0345093) 48 85 68 (curv = 0.056659) 57 67 77 (curv = 0.0687039) INFO: Intermediate dominant points are 39 142 50 49 122 55 48 85 68 57 67 77 66 48 76 INFO: Final dominant points are 39 142 50 49 122 55 48 85 68 57 67 77 66 48 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 39 142 50 49 118 57 48 96 65 55 72 75 66 48 76 INFO: Distances between consecutive points are 27 23 27 26 INFO: Selected control points in test subject's space are 39 80 0 43 68 4 43 59 7 46 48 12 51 36 14 INFO: Distances between consecutive points in test subject's space are 13 9 12 13 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323508 INFO: Points where local peeks in curvature occur are 49 120 56 (curv = 0.0732467) 48 86 68 (curv = 0.0439844) 56 69 77 (curv = 0.0715536) INFO: Intermediate dominant points are 39 142 50 49 120 56 48 92 66 56 69 77 70 43 75 INFO: Final dominant points are 39 142 50 49 120 56 49 82 69 56 69 77 70 43 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 39 142 50 49 118 57 48 93 66 56 69 77 70 43 75 INFO: Distances between consecutive points are 27 27 28 30 INFO: Selected control points in test subject's space are 39 80 0 43 68 4 43 57 8 46 46 13 53 33 14 INFO: Distances between consecutive points in test subject's space are 13 12 12 15 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0345923 INFO: Points where local peeks in curvature occur are 49 120 56 (curv = 0.0805901) 48 112 60 (curv = 0.0358878) 48 105 61 (curv = 0.0421637) 48 85 68 (curv = 0.0388723) 49 81 70 (curv = 0.0450621) 58 65 77 (curv = 0.0593438) INFO: Intermediate dominant points are 39 142 50 49 120 56 49 81 70 58 65 77 70 43 74 INFO: Final dominant points are 39 142 50 49 120 56 49 81 70 58 65 77 70 43 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 39 142 50 49 118 57 48 94 66 56 70 76 70 43 74 INFO: Distances between consecutive points are 27 26 27 30 INFO: Selected control points in test subject's space are 39 80 0 43 68 4 43 58 8 46 47 12 53 33 13 INFO: Distances between consecutive points in test subject's space are 13 11 12 16 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0256765 INFO: Points where local peeks in curvature occur are 50 112 59 (curv = 0.0459082) 49 105 60 (curv = 0.0305428) 48 90 65 (curv = 0.0405562) 48 87 66 (curv = 0.0402902) 51 78 70 (curv = 0.0281512) 55 72 72 (curv = 0.0570862) INFO: Intermediate dominant points are 49 137 50 50 112 59 48 90 65 55 72 72 64 56 70 INFO: Final dominant points are 49 137 50 50 112 59 48 90 65 55 72 72 64 56 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 137 50 50 116 57 49 96 63 52 76 70 64 56 70 INFO: Distances between consecutive points are 22 21 21 23 INFO: Selected control points in test subject's space are 44 77 1 44 67 4 43 58 7 44 49 10 50 39 11 INFO: Distances between consecutive points in test subject's space are 10 10 10 12 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 83 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0302965 INFO: Points where local peeks in curvature occur are 51 116 56 (curv = 0.0649411) 49 109 58 (curv = 0.0424085) 48 86 66 (curv = 0.0469325) 55 71 72 (curv = 0.0529077) INFO: Intermediate dominant points are 49 138 50 51 116 56 48 86 66 55 71 72 64 55 69 INFO: Final dominant points are 49 138 50 51 116 56 48 86 66 55 71 72 64 55 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 138 50 51 118 56 49 98 62 51 78 69 64 55 69 INFO: Distances between consecutive points are 21 21 21 26 INFO: Selected control points in test subject's space are 44 77 1 44 68 4 43 59 7 44 50 10 50 39 11 INFO: Distances between consecutive points in test subject's space are 9 10 10 13 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0272789 INFO: Points where local peeks in curvature occur are 50 112 58 (curv = 0.0397037) 49 106 60 (curv = 0.0290173) 48 90 64 (curv = 0.0460883) 56 69 72 (curv = 0.051519) INFO: Intermediate dominant points are 49 139 50 50 112 58 48 90 64 56 69 72 64 55 69 INFO: Final dominant points are 49 139 50 50 112 58 48 90 64 56 69 72 64 55 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 139 50 50 118 56 49 98 62 51 78 69 64 55 69 INFO: Distances between consecutive points are 22 21 21 26 INFO: Selected control points in test subject's space are 44 78 1 44 68 4 43 59 7 44 50 10 50 39 11 INFO: Distances between consecutive points in test subject's space are 10 10 10 13 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0311282 INFO: Points where local peeks in curvature occur are 48 130 50 (curv = 0.106775) 49 116 56 (curv = 0.0346099) 49 98 63 (curv = 0.0324688) 48 86 66 (curv = 0.0462825) 54 72 72 (curv = 0.0328215) INFO: Intermediate dominant points are 40 145 52 48 130 50 49 116 56 48 86 66 68 47 66 INFO: Final dominant points are 40 145 52 48 130 50 49 116 56 48 86 66 68 47 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 145 52 48 121 53 49 99 63 52 76 71 68 47 66 INFO: Distances between consecutive points are 25 24 25 33 INFO: Selected control points in test subject's space are 39 81 1 43 70 3 43 60 7 44 49 10 52 34 11 INFO: Distances between consecutive points in test subject's space are 12 11 11 17 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0315813 INFO: Points where local peeks in curvature occur are 48 123 53 (curv = 0.0680198) 49 116 58 (curv = 0.0532367) 48 85 67 (curv = 0.0548639) 57 68 77 (curv = 0.0618211) 61 56 76 (curv = 0.0398051) INFO: Intermediate dominant points are 38 142 50 48 123 53 48 85 67 57 68 77 66 39 72 INFO: Final dominant points are 38 142 50 48 123 53 48 85 67 57 68 77 66 39 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 142 50 49 117 58 48 93 65 57 69 76 66 39 72 INFO: Distances between consecutive points are 28 25 28 32 INFO: Selected control points in test subject's space are 38 80 0 43 68 4 43 57 8 47 46 12 51 31 13 INFO: Distances between consecutive points in test subject's space are 14 12 12 16 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0264541 INFO: Points where local peeks in curvature occur are 47 121 54 (curv = 0.0408672) 49 110 61 (curv = 0.0383102) 48 91 66 (curv = 0.0267385) 48 82 69 (curv = 0.0353768) 56 63 73 (curv = 0.054385) 65 51 69 (curv = 0.0300951) INFO: Intermediate dominant points are 40 139 54 47 121 54 48 86 67 56 63 73 85 41 54 INFO: Final dominant points are 40 139 54 47 121 54 50 77 70 56 63 73 85 41 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 139 54 49 113 60 48 86 67 59 59 72 85 41 54 INFO: Distances between consecutive points are 28 28 30 36 INFO: Selected control points in test subject's space are 39 79 2 43 66 5 43 54 9 48 41 12 60 30 8 INFO: Distances between consecutive points in test subject's space are 14 13 14 17 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0312204 INFO: Points where local peeks in curvature occur are 46 126 51 (curv = 0.0858453) 46 121 53 (curv = 0.0642243) 48 114 57 (curv = 0.0440255) 48 99 63 (curv = 0.0412294) 47 91 65 (curv = 0.034248) 47 85 68 (curv = 0.0323104) 56 62 73 (curv = 0.0415647) INFO: Intermediate dominant points are 38 139 54 46 126 51 48 114 57 56 62 73 67 48 66 INFO: Final dominant points are 38 139 54 46 126 51 48 114 57 56 62 73 67 48 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 139 54 47 118 55 48 95 64 51 73 72 67 48 66 INFO: Distances between consecutive points are 23 25 24 30 INFO: Selected control points in test subject's space are 38 79 2 42 68 3 43 58 7 44 48 11 51 35 11 INFO: Distances between consecutive points in test subject's space are 12 11 11 15 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0300342 INFO: Points where local peeks in curvature occur are 51 117 56 (curv = 0.0566231) 49 108 58 (curv = 0.046204) 49 98 62 (curv = 0.0320664) 48 94 63 (curv = 0.036448) 48 85 66 (curv = 0.0543519) 55 69 71 (curv = 0.0491899) INFO: Intermediate dominant points are 50 138 50 51 117 56 48 85 66 55 69 71 70 52 61 INFO: Final dominant points are 50 138 50 51 117 56 48 85 66 55 69 71 70 52 61 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 138 50 51 116 56 48 95 63 53 73 70 70 52 61 INFO: Distances between consecutive points are 23 22 24 28 INFO: Selected control points in test subject's space are 44 77 1 44 67 4 43 58 7 45 48 10 53 36 9 INFO: Distances between consecutive points in test subject's space are 10 10 11 14 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.030139 INFO: Points where local peeks in curvature occur are 49 129 50 (curv = 0.0972343) 50 115 57 (curv = 0.0389286) 49 98 63 (curv = 0.0383163) 48 90 65 (curv = 0.0412911) 48 87 66 (curv = 0.0402902) 51 78 70 (curv = 0.0302662) 56 70 72 (curv = 0.0457921) INFO: Intermediate dominant points are 45 141 52 50 115 57 48 90 65 56 70 72 64 56 70 INFO: Final dominant points are 45 141 52 50 115 57 48 90 65 56 70 72 64 56 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 45 141 52 50 119 55 49 98 62 51 78 70 64 56 70 INFO: Distances between consecutive points are 23 22 22 26 INFO: Selected control points in test subject's space are 42 79 1 44 69 3 43 59 7 44 50 10 50 39 11 INFO: Distances between consecutive points in test subject's space are 10 11 10 13 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0328504 INFO: Points where local peeks in curvature occur are 48 122 54 (curv = 0.0761344) 48 85 68 (curv = 0.0514784) 57 69 76 (curv = 0.0645713) INFO: Intermediate dominant points are 38 143 50 48 122 54 48 85 68 57 69 76 66 39 72 INFO: Final dominant points are 38 143 50 48 122 54 48 85 68 57 69 76 66 39 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 143 50 49 118 57 48 94 65 56 70 76 66 39 72 INFO: Distances between consecutive points are 28 25 28 33 INFO: Selected control points in test subject's space are 38 80 0 43 68 4 43 58 8 46 47 12 51 31 13 INFO: Distances between consecutive points in test subject's space are 14 11 12 17 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.023084 INFO: Points where local peeks in curvature occur are 50 118 57 (curv = 0.025345) 50 113 59 (curv = 0.0293724) 49 106 61 (curv = 0.0242046) 49 99 64 (curv = 0.0280338) 48 90 66 (curv = 0.0333539) 48 86 67 (curv = 0.0362278) 57 64 72 (curv = 0.0352385) INFO: Intermediate dominant points are 47 135 52 50 113 59 48 86 67 57 64 72 67 47 66 INFO: Final dominant points are 47 135 52 50 113 59 48 86 67 57 64 72 67 47 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 135 52 50 114 59 48 94 65 53 73 71 67 47 66 INFO: Distances between consecutive points are 22 21 22 30 INFO: Selected control points in test subject's space are 43 76 1 44 67 5 43 58 8 45 48 11 51 34 11 INFO: Distances between consecutive points in test subject's space are 10 10 11 15 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0346324 INFO: Points where local peeks in curvature occur are 48 123 54 (curv = 0.0717193) 49 119 57 (curv = 0.0728803) 48 112 60 (curv = 0.0355599) 47 89 67 (curv = 0.0489157) 48 84 68 (curv = 0.0452551) 57 66 77 (curv = 0.0570772) INFO: Intermediate dominant points are 38 142 50 49 119 57 47 89 67 57 66 77 68 43 74 INFO: Final dominant points are 38 142 50 49 119 57 47 89 67 57 66 77 68 43 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 142 50 49 119 57 48 95 65 55 72 75 68 43 74 INFO: Distances between consecutive points are 26 25 26 32 INFO: Selected control points in test subject's space are 38 80 0 43 69 4 43 58 8 46 48 12 52 33 13 INFO: Distances between consecutive points in test subject's space are 13 12 11 16 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0329752 INFO: Points where local peeks in curvature occur are 48 123 54 (curv = 0.067769) 49 109 60 (curv = 0.0345308) 48 105 61 (curv = 0.0395558) 47 89 67 (curv = 0.0612578) 56 69 76 (curv = 0.0563246) INFO: Intermediate dominant points are 38 142 50 48 123 54 47 89 67 56 69 76 65 40 76 INFO: Final dominant points are 38 142 50 48 123 54 47 89 67 56 69 76 65 40 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 142 50 49 118 57 48 95 65 55 71 75 65 40 76 INFO: Distances between consecutive points are 27 24 27 33 INFO: Selected control points in test subject's space are 38 80 0 43 68 4 43 58 8 46 47 12 50 32 14 INFO: Distances between consecutive points in test subject's space are 14 11 12 16 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032066 INFO: Points where local peeks in curvature occur are 48 123 54 (curv = 0.0772975) 47 88 67 (curv = 0.0598019) 48 84 68 (curv = 0.0409628) 56 69 75 (curv = 0.0351958) INFO: Intermediate dominant points are 38 141 50 48 123 54 47 88 67 56 69 75 65 48 75 INFO: Final dominant points are 38 141 50 48 123 54 47 88 67 56 69 75 65 48 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 141 50 49 119 57 48 97 65 52 75 72 65 48 75 INFO: Distances between consecutive points are 26 23 23 30 INFO: Selected control points in test subject's space are 38 79 1 43 69 4 43 59 7 44 49 11 50 36 13 INFO: Distances between consecutive points in test subject's space are 12 10 11 14 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0360051 INFO: Points where local peeks in curvature occur are 48 122 55 (curv = 0.11157) 47 88 67 (curv = 0.0619904) INFO: Intermediate dominant points are 38 141 50 48 122 55 47 88 67 54 72 74 65 48 75 INFO: Final dominant points are 38 141 50 48 122 55 47 88 67 59 61 76 65 48 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 141 50 48 120 56 48 97 65 52 75 72 65 48 75 INFO: Distances between consecutive points are 24 25 23 30 INFO: Selected control points in test subject's space are 38 79 1 43 69 4 43 59 7 44 49 11 50 36 13 INFO: Distances between consecutive points in test subject's space are 12 10 11 14 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0221565 INFO: Points where local peeks in curvature occur are 41 126 54 (curv = 0.0487081) 44 118 55 (curv = 0.0539108) 45 97 61 (curv = 0.0363403) 51 78 67 (curv = 0.0268938) INFO: Intermediate dominant points are 38 142 54 44 118 55 45 97 61 51 78 67 62 46 80 INFO: Final dominant points are 38 142 54 44 118 55 45 97 61 51 78 67 62 46 80 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 142 54 45 117 55 46 93 61 54 69 70 62 46 80 INFO: Distances between consecutive points are 26 25 27 26 INFO: Selected control points in test subject's space are 38 80 2 41 68 3 42 57 7 45 46 11 49 35 15 INFO: Distances between consecutive points in test subject's space are 12 12 12 12 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0344938 INFO: Points where local peeks in curvature occur are 47 123 54 (curv = 0.110963) 47 89 67 (curv = 0.0499234) INFO: Intermediate dominant points are 38 141 50 47 123 54 47 89 67 54 72 74 65 48 75 INFO: Final dominant points are 38 141 50 47 123 54 47 89 67 59 61 76 65 48 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 141 50 48 119 57 48 97 65 53 74 73 65 48 75 INFO: Distances between consecutive points are 25 23 25 29 INFO: Selected control points in test subject's space are 38 79 1 43 69 4 43 59 7 45 49 11 50 36 13 INFO: Distances between consecutive points in test subject's space are 12 10 11 14 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0307481 INFO: Points where local peeks in curvature occur are 50 122 55 (curv = 0.0711013) 49 113 59 (curv = 0.0374466) 49 107 60 (curv = 0.03146) 47 98 61 (curv = 0.0464145) 48 87 64 (curv = 0.0520173) INFO: Intermediate dominant points are 45 136 48 50 122 55 47 98 61 48 87 64 62 62 74 INFO: Final dominant points are 45 136 48 50 122 55 47 97 62 48 87 64 62 62 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 45 136 48 50 118 57 47 100 61 51 82 66 62 62 74 INFO: Distances between consecutive points are 21 19 19 24 INFO: Selected control points in test subject's space are 42 76 0 44 68 4 42 60 6 44 52 9 49 43 12 INFO: Distances between consecutive points in test subject's space are 9 8 9 11 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0336272 INFO: Points where local peeks in curvature occur are 50 122 55 (curv = 0.0509143) 49 113 59 (curv = 0.059033) 46 88 63 (curv = 0.0726035) 52 78 67 (curv = 0.0492256) INFO: Intermediate dominant points are 44 135 49 49 113 59 46 88 63 53 75 68 56 60 79 INFO: Final dominant points are 44 135 49 49 113 59 46 88 63 55 66 71 56 60 79 INFO: Selected control points are 44 135 49 50 112 59 46 89 63 55 67 71 56 60 79 INFO: Distances between consecutive points are 26 24 25 11 INFO: Selected control points in test subject's space are 41 76 1 44 66 5 42 55 7 46 45 11 46 42 14 INFO: Distances between consecutive points in test subject's space are 11 11 11 4 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 7.395 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 133 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5133 total streamlines (min/mean/max length: 8/57/103) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3441 non-truncated streamlines (min/mean/max length: 8/56/101) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22722 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0727782 INFO: Points where local peeks in curvature occur are 126 123 54 (curv = 0.143583) 120 133 60 (curv = 0.0760566) INFO: Intermediate dominant points are 132 133 46 126 123 54 120 133 60 110 151 60 104 163 52 INFO: Final dominant points are 132 133 46 126 123 54 120 133 60 108 157 57 104 163 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 132 133 46 125 124 55 118 136 59 111 148 60 104 163 52 INFO: Distances between consecutive points are 15 14 14 18 INFO: Selected control points in test subject's space are 84 73 0 80 69 3 77 76 4 74 82 3 70 89 0 INFO: Distances between consecutive points in test subject's space are 6 8 7 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 83 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0621364 INFO: Points where local peeks in curvature occur are 130 126 48 (curv = 0.13717) 126 121 54 (curv = 0.111329) 117 128 63 (curv = 0.122243) INFO: Intermediate dominant points are 132 145 49 130 126 48 117 128 63 108 154 59 112 172 53 INFO: Final dominant points are 132 145 49 130 126 48 117 128 63 108 163 59 112 172 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 132 145 49 130 124 49 116 131 63 108 152 60 112 172 53 INFO: Distances between consecutive points are 21 21 23 22 INFO: Selected control points in test subject's space are 84 79 0 83 69 2 76 74 5 72 84 3 74 93 0 INFO: Distances between consecutive points in test subject's space are 10 9 11 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0792329 INFO: Points where local peeks in curvature occur are 127 124 53 (curv = 0.154217) 123 129 60 (curv = 0.129442) 114 142 58 (curv = 0.086593) 112 150 60 (curv = 0.0976623) INFO: Intermediate dominant points are 132 133 46 127 124 53 123 129 60 112 150 60 106 164 52 INFO: Final dominant points are 132 133 46 127 124 53 123 129 60 112 150 60 106 164 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 132 133 46 126 124 55 119 136 59 112 149 60 106 164 52 INFO: Distances between consecutive points are 14 14 15 18 INFO: Selected control points in test subject's space are 84 73 0 81 69 3 77 76 4 74 82 3 71 89 0 INFO: Distances between consecutive points in test subject's space are 6 8 7 8 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0858154 INFO: Points where local peeks in curvature occur are 130 132 48 (curv = 0.0904932) 128 126 53 (curv = 0.109336) 124 126 62 (curv = 0.15125) INFO: Intermediate dominant points are 135 145 50 128 126 53 124 126 62 122 136 65 117 147 61 INFO: Final dominant points are 135 145 50 128 126 53 124 126 62 117 141 65 117 147 61 WARN: Defaulting to equidistant control points INFO: Selected control points are 135 145 50 130 132 48 125 125 58 122 134 65 117 147 61 INFO: Distances between consecutive points are 14 13 12 14 INFO: Selected control points in test subject's space are 85 79 1 83 72 1 80 70 4 79 75 5 76 81 3 INFO: Distances between consecutive points in test subject's space are 7 5 5 7 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0868662 INFO: Points where local peeks in curvature occur are 129 127 51 (curv = 0.0990964) 124 127 62 (curv = 0.140208) INFO: Intermediate dominant points are 135 145 50 129 127 51 124 127 62 122 135 65 116 147 61 INFO: Final dominant points are 135 145 50 129 127 51 124 127 62 118 140 65 116 147 61 WARN: Defaulting to equidistant control points INFO: Selected control points are 135 145 50 131 133 48 125 125 57 122 133 65 116 147 61 INFO: Distances between consecutive points are 13 13 12 16 INFO: Selected control points in test subject's space are 85 79 1 83 73 1 80 70 4 79 75 5 76 81 3 INFO: Distances between consecutive points in test subject's space are 6 5 5 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 28 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 4 INFO: Minimum allowable curvature at a dominant point is 0.0813816 INFO: Points where local peeks in curvature occur are 125 128 54 (curv = 0.133574) INFO: Intermediate dominant points are 128 132 44 125 128 54 124 130 59 120 139 62 115 145 62 INFO: Final dominant points are 128 132 44 125 128 54 123 134 61 119 141 62 115 145 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 128 132 44 126 129 50 124 129 56 122 135 61 115 145 62 INFO: Distances between consecutive points are 7 6 8 12 INFO: Selected control points in test subject's space are 82 72 0 81 71 2 80 72 3 79 75 4 75 80 4 INFO: Distances between consecutive points in test subject's space are 2 2 3 6 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.113241 INFO: Points where local peeks in curvature occur are 125 132 48 (curv = 0.124137) 123 125 59 (curv = 0.203929) INFO: Intermediate dominant points are 123 143 50 125 132 48 123 125 59 120 130 62 113 139 58 INFO: Final dominant points are 123 143 50 125 132 48 123 125 59 118 135 62 113 139 58 WARN: Defaulting to equidistant control points INFO: Selected control points are 123 143 50 126 134 48 125 126 53 122 127 61 113 139 58 INFO: Distances between consecutive points are 10 9 9 15 INFO: Selected control points in test subject's space are 79 78 1 81 74 1 80 70 3 79 71 5 74 77 3 INFO: Distances between consecutive points in test subject's space are 4 5 2 8 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 41 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.100598 INFO: Points where local peeks in curvature occur are 138 140 49 (curv = 0.139223) 133 129 48 (curv = 0.112066) 129 125 53 (curv = 0.136031) INFO: Intermediate dominant points are 135 145 51 133 129 48 129 125 53 124 131 60 124 140 60 INFO: Final dominant points are 135 145 51 133 129 48 129 125 53 122 136 62 124 140 60 WARN: Defaulting to equidistant control points INFO: Selected control points are 135 145 51 136 134 48 129 125 52 124 131 60 124 140 60 INFO: Distances between consecutive points are 11 12 11 9 INFO: Selected control points in test subject's space are 85 79 1 85 73 1 82 69 2 80 73 4 80 78 4 INFO: Distances between consecutive points in test subject's space are 6 5 5 5 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0775112 INFO: Points where local peeks in curvature occur are 136 130 47 (curv = 0.110634) 133 125 49 (curv = 0.112854) 128 123 56 (curv = 0.111099) INFO: Intermediate dominant points are 139 144 52 137 132 47 133 125 49 128 123 56 119 140 63 INFO: Final dominant points are 139 144 52 136 131 47 133 125 49 128 123 56 119 140 63 INFO: Selected control points are 139 144 52 137 131 47 133 125 48 128 124 57 119 140 63 INFO: Distances between consecutive points are 14 7 10 19 INFO: Selected control points in test subject's space are 87 78 1 86 72 1 84 69 1 82 70 4 77 78 4 INFO: Distances between consecutive points in test subject's space are 6 4 4 9 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 15.69 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 131 streamlines for straying off mask INFO: Rejected 109 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6681 total streamlines (min/mean/max length: 8/62/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4259 non-truncated streamlines (min/mean/max length: 8/61/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (70+/-9, 160+/-17, 57+/-4) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 25975 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0731414 INFO: Points where local peeks in curvature occur are 49 127 51 (curv = 0.132895) 56 123 57 (curv = 0.130083) 62 133 63 (curv = 0.0882409) 72 152 60 (curv = 0.0749156) 73 162 56 (curv = 0.12123) INFO: Intermediate dominant points are 46 140 51 49 127 51 66 139 61 73 162 56 74 174 58 INFO: Final dominant points are 46 140 51 49 127 51 72 154 59 73 162 56 74 174 58 WARN: Defaulting to equidistant control points INFO: Selected control points are 46 140 51 54 124 54 64 137 62 73 154 59 74 174 58 INFO: Distances between consecutive points are 18 18 19 20 INFO: Selected control points in test subject's space are 42 79 1 46 71 3 51 78 4 55 86 2 56 95 1 INFO: Distances between consecutive points in test subject's space are 9 9 9 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0681826 INFO: Points where local peeks in curvature occur are 57 128 59 (curv = 0.136212) 70 153 62 (curv = 0.0865942) 72 162 58 (curv = 0.121728) INFO: Intermediate dominant points are 52 133 50 57 128 59 67 144 61 72 162 58 67 169 54 INFO: Final dominant points are 52 133 50 57 128 59 70 155 61 72 162 58 67 169 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 133 50 57 128 60 66 143 62 71 156 61 67 169 54 INFO: Distances between consecutive points are 12 18 14 15 INFO: Selected control points in test subject's space are 45 75 1 47 73 4 52 81 4 54 87 3 52 92 0 INFO: Distances between consecutive points in test subject's space are 4 9 6 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0722427 INFO: Points where local peeks in curvature occur are 50 126 51 (curv = 0.128442) 56 124 57 (curv = 0.0996298) 60 128 62 (curv = 0.108256) 72 152 60 (curv = 0.0737715) 73 159 57 (curv = 0.129019) INFO: Intermediate dominant points are 46 140 51 50 126 51 60 128 62 73 159 57 73 174 58 INFO: Final dominant points are 46 140 51 50 126 51 60 128 62 73 159 57 73 174 58 INFO: Selected control points are 46 140 51 50 126 52 61 129 62 73 159 58 73 174 58 INFO: Distances between consecutive points are 15 15 33 15 INFO: Selected control points in test subject's space are 42 79 1 44 72 2 49 74 5 55 88 2 55 95 1 INFO: Distances between consecutive points in test subject's space are 7 6 16 7 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 26.923 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 1214 streamlines for straying off mask INFO: Rejected 230 streamlines for reversing direction INFO: Rejected 157 streamlines as length outliers INFO: Have 8174 total streamlines (min/mean/max length: 87/131/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 5872 non-truncated streamlines (min/mean/max length: 87/132/165) INFO: Center of mass of start points: (102+/-6, 39+/-9, 100+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 40+/-8, 101+/-16) INFO: Split streamlines into 36 segments Computing path histograms INFO: Total streamline volume is 66024 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049211 INFO: Points where local peeks in curvature occur are 107 44 86 (curv = 0.105289) 116 54 86 (curv = 0.0947602) 101 87 85 (curv = 0.0532037) 91 91 84 (curv = 0.0912266) 84 90 85 (curv = 0.0582558) 61 59 86 (curv = 0.103901) 64 52 86 (curv = 0.076793) INFO: Intermediate dominant points are 99 38 108 107 44 86 111 72 86 91 91 84 66 74 87 61 59 86 72 38 111 INFO: Final dominant points are 99 38 108 107 44 86 104 84 86 91 91 84 65 72 87 61 59 86 72 38 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 38 108 108 45 86 112 70 87 93 91 84 69 78 87 63 54 86 72 38 111 INFO: Distances between consecutive points are 25 25 28 27 25 31 INFO: Selected control points in test subject's space are 67 33 23 71 34 17 73 47 15 64 57 13 53 51 15 49 40 16 54 34 24 INFO: Distances between consecutive points in test subject's space are 7 13 14 13 12 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0477143 INFO: Points where local peeks in curvature occur are 105 42 89 (curv = 0.0636933) 109 46 85 (curv = 0.0675706) 116 56 85 (curv = 0.113) 95 90 84 (curv = 0.0810775) 90 91 84 (curv = 0.0781857) 61 62 87 (curv = 0.0798498) 63 55 86 (curv = 0.0870717) 65 51 87 (curv = 0.075599) 69 47 91 (curv = 0.0615153) INFO: Intermediate dominant points are 99 39 103 116 56 85 109 75 85 95 90 84 65 71 87 63 55 86 72 39 111 INFO: Final dominant points are 99 39 103 116 56 85 107 79 85 95 90 84 63 68 87 63 55 86 72 39 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 113 50 85 110 73 85 90 91 84 67 75 86 65 52 87 72 39 111 INFO: Distances between consecutive points are 25 23 27 28 23 28 INFO: Selected control points in test subject's space are 67 33 22 74 37 16 72 48 15 63 57 13 52 50 15 50 39 16 54 35 24 INFO: Distances between consecutive points in test subject's space are 10 11 13 13 11 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0518729 INFO: Points where local peeks in curvature occur are 106 43 89 (curv = 0.0806586) 111 47 85 (curv = 0.0810966) 117 54 86 (curv = 0.102497) 116 64 87 (curv = 0.0572292) 90 92 85 (curv = 0.105873) 60 59 85 (curv = 0.0845658) 61 55 85 (curv = 0.0840931) 68 46 91 (curv = 0.0601732) INFO: Intermediate dominant points are 98 38 109 117 54 86 113 69 88 90 92 85 69 78 89 60 59 85 69 38 106 INFO: Final dominant points are 98 38 109 117 54 86 104 85 87 90 92 85 63 72 89 60 59 85 69 38 106 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 38 109 108 45 86 114 68 88 96 91 85 71 81 88 61 56 85 69 38 106 INFO: Distances between consecutive points are 26 24 29 27 27 29 INFO: Selected control points in test subject's space are 66 33 23 71 34 17 74 46 16 66 57 14 54 53 15 49 41 16 52 34 23 INFO: Distances between consecutive points in test subject's space are 8 12 14 13 13 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0475777 INFO: Points where local peeks in curvature occur are 110 44 82 (curv = 0.0997343) 115 56 83 (curv = 0.0621027) 91 91 83 (curv = 0.111425) 62 58 86 (curv = 0.0912108) 65 52 86 (curv = 0.0840715) INFO: Intermediate dominant points are 100 34 103 110 44 82 111 71 84 91 91 83 67 75 86 62 58 86 73 39 111 INFO: Final dominant points are 100 34 103 110 44 82 104 83 85 91 91 83 65 71 86 62 58 86 73 39 111 INFO: Selected control points are 100 34 103 112 45 83 107 82 85 89 91 83 64 73 87 64 56 84 73 39 111 INFO: Distances between consecutive points are 26 37 20 31 17 33 INFO: Selected control points in test subject's space are 67 31 22 73 34 16 71 52 14 62 57 13 50 49 15 50 41 15 54 35 24 INFO: Distances between consecutive points in test subject's space are 9 18 10 15 8 12 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 67.409 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 885 streamlines for straying off mask INFO: Rejected 386 streamlines for reversing direction INFO: Rejected 67 streamlines as length outliers INFO: Have 26289 total streamlines (min/mean/max length: 51/90/117) Processing pathway 8 of 18... Matching streamline ends INFO: Have 19509 non-truncated streamlines (min/mean/max length: 52/91/119) INFO: Center of mass of start points: (103+/-5, 187+/-6, 76+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-11) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 65140 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.059904 INFO: Points where local peeks in curvature occur are 111 171 71 (curv = 0.0917851) 99 155 73 (curv = 0.0685894) 89 153 75 (curv = 0.0748927) 80 155 73 (curv = 0.0688051) 72 164 73 (curv = 0.08475) 72 173 73 (curv = 0.0861197) INFO: Intermediate dominant points are 108 192 82 111 171 71 89 153 75 73 162 73 79 185 84 INFO: Final dominant points are 108 192 82 111 171 71 89 153 75 72 173 73 79 185 84 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 192 82 111 174 70 97 154 74 74 160 73 79 185 84 INFO: Distances between consecutive points are 22 25 24 28 INFO: Selected control points in test subject's space are 72 105 6 74 95 4 67 86 7 56 90 6 58 103 7 INFO: Distances between consecutive points in test subject's space are 10 12 12 13 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0644077 INFO: Points where local peeks in curvature occur are 107 186 72 (curv = 0.128359) 111 170 71 (curv = 0.0953069) 99 155 73 (curv = 0.0675165) 80 155 74 (curv = 0.0708143) 73 163 73 (curv = 0.0841956) 72 173 73 (curv = 0.108899) INFO: Intermediate dominant points are 107 193 83 111 170 71 80 155 74 72 173 73 79 185 84 INFO: Final dominant points are 107 193 83 111 170 71 80 155 74 72 173 73 79 185 84 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 193 83 111 175 70 97 154 74 74 161 73 79 185 84 INFO: Distances between consecutive points are 23 26 24 27 INFO: Selected control points in test subject's space are 72 106 7 74 96 4 67 86 7 56 90 6 58 103 7 INFO: Distances between consecutive points in test subject's space are 11 13 12 13 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0564526 INFO: Points where local peeks in curvature occur are 110 171 75 (curv = 0.119539) 99 155 74 (curv = 0.0658487) 89 153 75 (curv = 0.0594715) 81 154 74 (curv = 0.0736826) 70 170 73 (curv = 0.0842442) 72 179 74 (curv = 0.0903502) INFO: Intermediate dominant points are 104 191 78 110 171 75 99 155 74 72 179 74 77 194 81 INFO: Final dominant points are 104 191 78 110 171 75 99 155 74 72 179 74 77 194 81 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 191 78 108 166 74 86 153 75 70 171 73 77 194 81 INFO: Distances between consecutive points are 26 26 24 25 INFO: Selected control points in test subject's space are 70 105 5 72 92 6 61 86 7 54 95 5 57 107 6 INFO: Distances between consecutive points in test subject's space are 13 13 12 12 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0548839 INFO: Points where local peeks in curvature occur are 108 178 69 (curv = 0.059893) 109 169 69 (curv = 0.070872) 96 152 75 (curv = 0.077805) 87 151 75 (curv = 0.0799377) 75 159 73 (curv = 0.0808857) 72 172 70 (curv = 0.0867913) INFO: Intermediate dominant points are 99 191 75 108 178 69 96 152 75 72 172 70 75 186 75 INFO: Final dominant points are 99 191 75 108 178 69 96 152 75 72 172 70 75 186 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 191 75 109 170 69 94 152 75 74 162 72 75 186 75 INFO: Distances between consecutive points are 24 24 23 24 INFO: Selected control points in test subject's space are 68 104 5 73 93 4 65 86 7 56 91 5 56 103 5 INFO: Distances between consecutive points in test subject's space are 12 11 10 12 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0559436 INFO: Points where local peeks in curvature occur are 108 173 70 (curv = 0.0589849) 101 155 74 (curv = 0.0705476) 90 151 75 (curv = 0.0896337) 76 158 73 (curv = 0.0738473) 72 171 70 (curv = 0.0899072) INFO: Intermediate dominant points are 104 189 75 108 173 70 90 151 75 72 171 70 75 186 75 INFO: Final dominant points are 104 189 75 108 173 70 90 151 75 72 171 70 75 186 75 INFO: Selected control points are 104 189 75 109 172 70 90 151 76 71 170 70 75 186 75 INFO: Distances between consecutive points are 18 29 28 17 INFO: Selected control points in test subject's space are 70 103 5 73 94 4 63 85 7 54 94 4 56 103 5 INFO: Distances between consecutive points in test subject's space are 10 14 13 9 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 400.373 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 422 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 46 streamlines as length outliers INFO: Have 13105 total streamlines (min/mean/max length: 30/60/89) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4877 non-truncated streamlines (min/mean/max length: 37/69/92) INFO: Center of mass of start points: (116+/-12, 180+/-10, 76+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 43247 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 186 78 114 169 75 111 152 77 105 134 78 98 116 78 INFO: Distances between consecutive points are 19 17 19 19 INFO: Selected control points in test subject's space are 72 102 6 75 93 6 73 85 8 70 77 9 67 68 10 INFO: Distances between consecutive points in test subject's space are 9 8 9 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.056007 INFO: Points where local peeks in curvature occur are 111 180 74 (curv = 0.0659913) 115 166 72 (curv = 0.110483) 108 151 74 (curv = 0.0854228) 106 139 83 (curv = 0.153811) INFO: Intermediate dominant points are 108 188 76 115 166 72 108 153 74 106 139 83 98 113 78 INFO: Final dominant points are 108 188 76 115 166 72 108 149 75 106 139 83 98 113 78 INFO: Selected control points are 108 188 76 114 167 72 107 149 76 106 139 82 98 113 78 INFO: Distances between consecutive points are 22 20 12 27 INFO: Selected control points in test subject's space are 72 103 5 75 92 5 72 84 7 71 80 10 67 67 10 INFO: Distances between consecutive points in test subject's space are 11 9 5 14 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 87.684 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 114 streamlines for straying off mask INFO: Rejected 21 streamlines for reversing direction INFO: Rejected 41 streamlines as length outliers INFO: Have 11836 total streamlines (min/mean/max length: 31/64/92) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4973 non-truncated streamlines (min/mean/max length: 41/71/92) INFO: Center of mass of start points: (67+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 39051 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0429525 INFO: Points where local peeks in curvature occur are 66 167 77 (curv = 0.093346) 70 153 77 (curv = 0.0725491) 70 144 82 (curv = 0.0693249) 71 135 82 (curv = 0.0881455) INFO: Intermediate dominant points are 69 194 84 66 167 77 70 151 78 71 135 82 81 111 75 INFO: Final dominant points are 69 194 84 66 167 77 70 146 81 71 135 82 81 111 75 INFO: Selected control points are 69 194 84 68 167 77 70 147 80 72 136 82 81 111 75 INFO: Distances between consecutive points are 28 20 11 27 INFO: Selected control points in test subject's space are 54 107 7 53 94 6 54 84 9 55 79 10 59 66 9 INFO: Distances between consecutive points in test subject's space are 13 10 5 14 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 66.787 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 126 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5151 total streamlines (min/mean/max length: 25/68/135) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1404 non-truncated streamlines (min/mean/max length: 55/86/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-4, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19695 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0242846 INFO: Points where local peeks in curvature occur are 99 92 103 (curv = 0.0317396) 96 102 105 (curv = 0.0474075) 96 110 106 (curv = 0.0279286) 97 113 106 (curv = 0.0272309) 97 120 106 (curv = 0.0265721) 97 129 104 (curv = 0.0269178) 97 143 98 (curv = 0.0305111) 96 146 97 (curv = 0.0288442) 96 155 91 (curv = 0.0338547) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 122 106 97 143 98 97 163 79 INFO: Final dominant points are 101 74 96 96 102 105 97 131 104 97 143 98 97 163 79 INFO: Selected control points are 101 74 96 97 102 106 97 130 104 96 143 100 97 163 79 INFO: Distances between consecutive points are 30 28 14 29 INFO: Selected control points in test subject's space are 68 50 18 66 64 19 66 78 16 66 84 14 67 91 7 INFO: Distances between consecutive points in test subject's space are 14 14 6 10 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 15.346 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 20 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 4349 total streamlines (min/mean/max length: 30/66/116) Processing pathway 12 of 18... Matching streamline ends INFO: Have 925 non-truncated streamlines (min/mean/max length: 56/83/119) INFO: Center of mass of start points: (81+/-4, 81+/-7, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 160+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19170 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0331682 INFO: Points where local peeks in curvature occur are 84 111 108 (curv = 0.0423259) 83 124 107 (curv = 0.0611626) 83 139 100 (curv = 0.0437406) 81 144 96 (curv = 0.0386019) INFO: Intermediate dominant points are 79 80 97 84 111 108 83 124 107 81 144 96 86 162 95 INFO: Final dominant points are 79 80 97 84 111 108 83 124 107 81 144 96 86 162 95 INFO: Selected control points are 79 80 97 83 111 109 84 125 106 80 144 96 86 162 95 INFO: Distances between consecutive points are 33 14 22 19 INFO: Selected control points in test subject's space are 57 53 17 60 69 19 60 76 17 58 84 13 61 93 12 INFO: Distances between consecutive points in test subject's space are 16 7 9 10 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 10.751 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from 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Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 727 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3471 total streamlines (min/mean/max length: 2/43/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1086 non-truncated streamlines (min/mean/max length: 17/51/89) INFO: Center of mass of start points: (110+/-6, 82+/-12, 74+/-11) INFO: Center of mass of midpoints: (112+/-2, 99+/-5, 57+/-5) INFO: Center of mass of end points: (116+/-4, 121+/-14, 42+/-11) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 16121 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0250544 INFO: Points where local peeks in curvature occur are 105 85 69 (curv = 0.0735419) 115 108 47 (curv = 0.0441818) INFO: Intermediate dominant points are 106 77 75 105 85 69 115 108 47 119 120 44 INFO: Final dominant points are 106 77 75 105 85 69 115 108 47 119 120 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 77 75 107 90 65 113 103 51 119 120 44 INFO: Distances between consecutive points are 16 20 19 INFO: Selected control points in test subject's space are 70 49 12 71 54 8 74 59 3 77 67 0 INFO: Distances between consecutive points in test subject's space are 6 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0267655 INFO: Points where local peeks in curvature occur are 107 86 68 (curv = 0.0761507) 114 107 49 (curv = 0.0461787) INFO: Intermediate dominant points are 109 79 73 110 92 63 114 107 49 118 118 46 INFO: Final dominant points are 109 79 73 112 100 55 114 107 49 118 118 46 INFO: Selected control points are 109 79 73 110 98 56 112 103 48 118 118 46 INFO: Distances between consecutive points are 26 10 16 INFO: Selected control points in test subject's space are 72 50 11 73 57 5 74 59 3 77 66 1 INFO: Distances between consecutive points in test subject's space are 9 3 8 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 6.418 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 4 streamlines for straying off mask INFO: Rejected 64 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 4142 total streamlines (min/mean/max length: 13/44/90) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1213 non-truncated streamlines (min/mean/max length: 26/54/92) INFO: Center of mass of start points: (71+/-5, 80+/-7, 78+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-3) INFO: Center of mass of end points: (63+/-4, 126+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 17454 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0286503 INFO: Points where local peeks in curvature occur are 60 115 45 (curv = 0.0999518) INFO: Intermediate dominant points are 75 80 85 68 91 67 63 106 50 57 125 46 INFO: Final dominant points are 75 80 85 66 98 58 60 115 45 57 125 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 80 85 68 91 67 63 106 50 57 125 46 INFO: Distances between consecutive points are 22 23 20 INFO: Selected control points in test subject's space are 55 52 14 52 56 8 50 62 3 47 71 0 INFO: Distances between consecutive points in test subject's space are 8 8 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0350095 INFO: Points where local peeks in curvature occur are 60 115 44 (curv = 0.104899) INFO: Intermediate dominant points are 71 86 81 66 95 63 60 115 44 58 125 46 INFO: Final dominant points are 71 86 81 62 107 49 60 115 44 58 125 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 86 81 66 94 64 62 107 49 58 125 46 INFO: Distances between consecutive points are 19 20 19 INFO: Selected control points in test subject's space are 54 55 13 51 57 7 50 62 2 48 71 0 INFO: Distances between consecutive points in test subject's space are 7 7 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0247048 INFO: Points where local peeks in curvature occur are 70 96 62 (curv = 0.0338228) INFO: Intermediate dominant points are 72 81 81 70 96 62 67 104 53 63 116 44 INFO: Final dominant points are 72 81 81 70 96 62 66 109 48 63 116 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 81 81 72 93 66 67 104 53 63 116 44 INFO: Distances between consecutive points are 19 18 16 INFO: Selected control points in test subject's space are 54 52 13 54 57 8 52 61 4 50 66 0 INFO: Distances between consecutive points in test subject's space are 7 6 7 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0276212 INFO: Points where local peeks in curvature occur are 66 94 64 (curv = 0.0369358) 67 100 57 (curv = 0.0486443) 66 104 50 (curv = 0.0378332) INFO: Intermediate dominant points are 69 81 81 67 91 67 67 100 57 63 113 42 INFO: Final dominant points are 69 81 81 66 94 64 67 100 57 63 113 42 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 81 81 67 91 67 67 102 54 63 113 42 INFO: Distances between consecutive points are 17 17 17 INFO: Selected control points in test subject's space are 53 52 13 52 56 8 52 60 4 50 64 0 INFO: Distances between consecutive points in test subject's space are 6 6 6 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0355848 INFO: Points where local peeks in curvature occur are 78 81 76 (curv = 0.0675187) 65 103 58 (curv = 0.0368729) 64 108 51 (curv = 0.0400058) INFO: Intermediate dominant points are 78 75 94 78 81 76 64 108 51 62 118 43 INFO: Final dominant points are 78 75 94 78 81 76 64 108 51 62 118 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 78 75 94 76 84 72 66 102 58 62 118 43 INFO: Distances between consecutive points are 24 25 22 INFO: Selected control points in test subject's space are 57 50 17 56 53 10 51 60 5 50 67 0 INFO: Distances between consecutive points in test subject's space are 8 10 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 39 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0269591 INFO: Points where local peeks in curvature occur are 67 92 64 (curv = 0.0287022) 66 99 58 (curv = 0.0278695) INFO: Intermediate dominant points are 69 85 74 67 92 64 64 107 49 60 119 45 INFO: Final dominant points are 69 85 74 67 92 64 62 112 46 60 119 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 85 74 66 94 62 64 105 51 60 119 45 INFO: Distances between consecutive points are 15 16 16 INFO: Selected control points in test subject's space are 53 54 11 51 57 7 50 61 3 49 68 1 INFO: Distances between consecutive points in test subject's space are 5 6 7 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0226542 INFO: Points where local peeks in curvature occur are 67 101 57 (curv = 0.0438475) 66 109 48 (curv = 0.0271273) INFO: Intermediate dominant points are 76 76 76 73 90 69 67 101 57 65 113 41 INFO: Final dominant points are 76 76 76 71 94 64 67 101 57 65 113 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 76 76 73 90 69 67 102 55 65 113 41 INFO: Distances between consecutive points are 16 19 18 INFO: Selected control points in test subject's space are 56 49 12 55 55 9 52 60 4 51 64 0 INFO: Distances between consecutive points in test subject's space are 7 8 6 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0189828 INFO: Points where local peeks in curvature occur are 76 85 79 (curv = 0.0472759) 75 89 74 (curv = 0.0221693) INFO: Intermediate dominant points are 76 78 93 76 85 79 67 102 56 61 115 44 INFO: Final dominant points are 76 78 93 76 85 79 64 107 48 61 115 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 78 93 74 90 73 67 102 56 61 115 44 INFO: Distances between consecutive points are 23 22 19 INFO: Selected control points in test subject's space are 56 52 16 55 56 10 52 60 5 49 65 1 INFO: Distances between consecutive points in test subject's space are 7 7 7 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0245745 INFO: Points where local peeks in curvature occur are 76 83 80 (curv = 0.0481106) 69 93 68 (curv = 0.0430981) INFO: Intermediate dominant points are 78 84 96 76 83 80 69 93 68 62 117 41 INFO: Final dominant points are 78 84 96 76 83 80 69 93 68 62 117 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 78 84 96 75 85 77 68 102 59 62 117 41 INFO: Distances between consecutive points are 19 26 24 INFO: Selected control points in test subject's space are 57 55 17 56 54 12 52 60 6 50 66 0 INFO: Distances between consecutive points in test subject's space are 5 9 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 38 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0216578 INFO: Points where local peeks in curvature occur are 69 98 59 (curv = 0.0318145) INFO: Intermediate dominant points are 75 83 78 69 98 59 67 105 53 64 116 44 INFO: Final dominant points are 75 83 78 69 98 59 66 109 48 64 116 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 83 78 71 93 66 67 104 54 64 116 44 INFO: Distances between consecutive points are 16 17 16 INFO: Selected control points in test subject's space are 56 53 12 54 57 8 52 61 4 51 66 0 INFO: Distances between consecutive points in test subject's space are 6 6 6 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 37 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0248061 INFO: Points where local peeks in curvature occur are 66 91 65 (curv = 0.0270344) 62 111 46 (curv = 0.0604604) INFO: Intermediate dominant points are 68 86 73 66 91 65 62 111 46 60 119 45 INFO: Final dominant points are 68 86 73 66 91 65 62 111 46 60 119 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 86 73 66 95 61 64 106 50 60 119 45 INFO: Distances between consecutive points are 15 16 14 INFO: Selected control points in test subject's space are 52 54 10 51 57 7 51 62 3 49 68 1 INFO: Distances between consecutive points in test subject's space are 4 6 7 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 35 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0262026 INFO: Points where local peeks in curvature occur are 68 89 70 (curv = 0.0585571) 65 103 57 (curv = 0.026695) 65 109 50 (curv = 0.0434574) INFO: Intermediate dominant points are 71 86 77 68 95 65 65 109 50 60 117 44 INFO: Final dominant points are 71 86 77 65 104 56 65 109 50 60 117 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 86 77 68 94 66 65 106 54 60 117 44 INFO: Distances between consecutive points are 14 17 16 INFO: Selected control points in test subject's space are 54 54 12 52 57 8 51 62 4 49 66 0 INFO: Distances between consecutive points in test subject's space are 5 6 6 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0325074 INFO: Points where local peeks in curvature occur are 77 81 83 (curv = 0.0956877) 68 94 67 (curv = 0.0378207) INFO: Intermediate dominant points are 78 86 97 77 81 83 68 94 67 63 115 43 INFO: Final dominant points are 78 86 97 77 81 83 68 94 67 63 115 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 78 86 97 76 83 80 68 99 62 63 115 43 INFO: Distances between consecutive points are 17 25 25 INFO: Selected control points in test subject's space are 57 56 17 56 53 13 52 59 7 50 65 0 INFO: Distances between consecutive points in test subject's space are 5 9 9 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 37 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0156813 INFO: Points where local peeks in curvature occur are 71 93 68 (curv = 0.0181462) 64 108 47 (curv = 0.0459319) INFO: Intermediate dominant points are 75 87 78 71 93 68 66 103 54 62 115 44 INFO: Final dominant points are 75 87 78 71 93 68 64 108 47 62 115 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 87 78 70 95 65 66 103 54 62 115 44 INFO: Distances between consecutive points are 16 14 16 INFO: Selected control points in test subject's space are 56 55 12 53 58 8 51 60 4 50 65 1 INFO: Distances between consecutive points in test subject's space are 6 5 6 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 38 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0310981 INFO: Points where local peeks in curvature occur are 67 90 69 (curv = 0.0708834) 65 100 60 (curv = 0.0314336) 65 107 52 (curv = 0.0414609) INFO: Intermediate dominant points are 71 87 76 65 100 60 65 107 52 60 117 44 INFO: Final dominant points are 71 87 76 65 100 60 65 107 52 60 117 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 87 76 67 94 65 65 105 55 60 117 44 INFO: Distances between consecutive points are 14 15 17 INFO: Selected control points in test subject's space are 54 55 11 52 57 8 51 62 4 49 66 0 INFO: Distances between consecutive points in test subject's space are 4 6 6 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0285059 INFO: Points where local peeks in curvature occur are 67 88 69 (curv = 0.0819413) 65 100 60 (curv = 0.0291358) 65 106 53 (curv = 0.0539817) INFO: Intermediate dominant points are 70 86 75 67 94 65 65 106 53 60 117 44 INFO: Final dominant points are 70 86 75 65 100 60 65 106 53 60 117 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 86 75 67 94 65 65 105 54 60 117 44 INFO: Distances between consecutive points are 13 16 16 INFO: Selected control points in test subject's space are 53 54 11 52 57 8 51 61 4 49 66 0 INFO: Distances between consecutive points in test subject's space are 4 6 7 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0304647 INFO: Points where local peeks in curvature occur are 77 81 83 (curv = 0.0892779) 68 94 67 (curv = 0.0508498) INFO: Intermediate dominant points are 78 86 98 77 81 83 68 94 67 63 116 43 INFO: Final dominant points are 78 86 98 77 81 83 68 94 67 63 116 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 78 86 98 76 83 80 68 99 62 63 116 43 INFO: Distances between consecutive points are 18 25 26 INFO: Selected control points in test subject's space are 57 56 17 56 53 13 52 59 7 50 66 0 INFO: Distances between consecutive points in test subject's space are 5 9 10 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 38 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0238716 INFO: Points where local peeks in curvature occur are 65 101 59 (curv = 0.0260289) 65 107 52 (curv = 0.0447851) INFO: Intermediate dominant points are 70 86 75 66 95 64 65 107 52 60 117 44 INFO: Final dominant points are 70 86 75 65 101 59 65 107 52 60 117 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 86 75 67 94 65 65 105 54 60 117 44 INFO: Distances between consecutive points are 13 16 16 INFO: Selected control points in test subject's space are 53 54 11 52 57 8 51 61 4 49 66 0 INFO: Distances between consecutive points in test subject's space are 4 6 7 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0272243 INFO: Points where local peeks in curvature occur are 78 87 74 (curv = 0.049971) 72 95 62 (curv = 0.0298666) 68 102 54 (curv = 0.0295687) INFO: Intermediate dominant points are 77 75 87 78 87 74 72 95 62 62 116 43 INFO: Final dominant points are 77 75 87 78 87 74 72 95 62 62 116 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 77 75 87 78 89 72 69 100 56 62 116 43 INFO: Distances between consecutive points are 21 21 22 INFO: Selected control points in test subject's space are 56 50 15 57 55 10 53 59 5 50 66 0 INFO: Distances between consecutive points in test subject's space are 7 8 9 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 38 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0456336 INFO: Points where local peeks in curvature occur are 71 93 66 (curv = 0.0735826) 63 107 50 (curv = 0.0847071) INFO: Intermediate dominant points are 70 85 71 71 93 66 63 107 50 63 118 44 INFO: Final dominant points are 70 85 71 71 93 66 63 107 50 63 118 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 85 71 70 96 64 63 106 52 63 118 44 INFO: Distances between consecutive points are 13 17 14 INFO: Selected control points in test subject's space are 53 53 10 53 58 7 50 62 3 50 67 0 INFO: Distances between consecutive points in test subject's space are 6 6 6 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0220699 INFO: Points where local peeks in curvature occur are 72 96 61 (curv = 0.0241492) 69 100 56 (curv = 0.0224801) INFO: Intermediate dominant points are 77 83 79 72 96 61 68 102 53 63 115 43 INFO: Final dominant points are 77 83 79 72 96 61 67 108 47 63 115 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 77 83 79 74 93 65 68 102 53 63 115 43 INFO: Distances between consecutive points are 17 16 17 INFO: Selected control points in test subject's space are 56 53 12 55 56 8 52 60 4 50 65 0 INFO: Distances between consecutive points in test subject's space are 5 6 7 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 35 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.018136 INFO: Points where local peeks in curvature occur are INFO: Intermediate dominant points are 71 87 76 68 97 63 65 105 52 62 115 44 INFO: Final dominant points are 71 87 76 67 101 57 63 109 47 62 115 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 87 76 68 97 64 65 104 53 62 115 44 INFO: Distances between consecutive points are 16 13 15 INFO: Selected control points in test subject's space are 54 55 11 52 58 7 51 61 4 50 65 1 INFO: Distances between consecutive points in test subject's space are 5 4 5 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 35 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0174845 INFO: Points where local peeks in curvature occur are INFO: Intermediate dominant points are 76 87 78 70 97 63 65 105 51 62 115 44 INFO: Final dominant points are 76 87 78 68 101 58 63 109 47 62 115 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 87 78 70 96 64 66 104 52 62 115 44 INFO: Distances between consecutive points are 18 15 14 INFO: Selected control points in test subject's space are 56 55 12 53 58 7 51 61 3 50 65 1 INFO: Distances between consecutive points in test subject's space are 7 5 5 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 44 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0456642 INFO: Points where local peeks in curvature occur are 72 91 70 (curv = 0.0517787) 63 108 53 (curv = 0.0584774) INFO: Intermediate dominant points are 77 80 77 72 91 70 63 108 53 61 115 43 INFO: Final dominant points are 77 80 77 72 91 70 63 108 53 61 115 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 77 80 77 72 91 70 64 103 58 61 115 43 INFO: Distances between consecutive points are 14 19 19 INFO: Selected control points in test subject's space are 56 51 12 54 56 9 50 61 5 49 65 0 INFO: Distances between consecutive points in test subject's space are 6 8 6 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 34 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0260596 INFO: Points where local peeks in curvature occur are 65 109 51 (curv = 0.0444193) INFO: Intermediate dominant points are 64 86 70 66 97 63 65 109 51 61 117 44 INFO: Final dominant points are 64 86 70 65 103 57 65 109 51 61 117 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 86 70 66 97 63 65 107 53 61 117 44 INFO: Distances between consecutive points are 13 14 14 INFO: Selected control points in test subject's space are 50 54 10 51 58 7 51 62 4 49 66 0 INFO: Distances between consecutive points in test subject's space are 5 5 6 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 33 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0221837 INFO: Points where local peeks in curvature occur are 67 92 65 (curv = 0.0364801) INFO: Intermediate dominant points are 65 85 71 67 92 65 63 104 50 60 114 43 INFO: Final dominant points are 65 85 71 67 92 65 62 108 46 60 114 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 85 71 67 94 62 64 103 52 60 114 43 INFO: Distances between consecutive points are 13 14 15 INFO: Selected control points in test subject's space are 51 53 10 52 57 7 50 60 4 49 65 0 INFO: Distances between consecutive points in test subject's space are 5 5 6 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 46 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0446534 INFO: Points where local peeks in curvature occur are 60 113 45 (curv = 0.0826659) INFO: Intermediate dominant points are 57 82 69 65 94 63 60 113 45 57 125 46 INFO: Final dominant points are 57 82 69 63 105 52 60 113 45 57 125 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 57 82 69 65 94 63 61 108 48 57 125 46 INFO: Distances between consecutive points are 16 21 18 INFO: Selected control points in test subject's space are 47 52 10 51 57 7 49 62 2 47 71 0 INFO: Distances between consecutive points in test subject's space are 7 7 9 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 33 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0226733 INFO: Points where local peeks in curvature occur are 67 95 60 (curv = 0.025228) INFO: Intermediate dominant points are 65 85 69 67 95 60 66 105 49 64 114 42 INFO: Final dominant points are 65 85 69 67 95 60 65 108 45 64 114 42 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 85 69 67 94 61 66 104 51 64 114 42 INFO: Distances between consecutive points are 12 14 14 INFO: Selected control points in test subject's space are 51 53 9 52 57 7 51 61 3 51 65 0 INFO: Distances between consecutive points in test subject's space are 5 6 5 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 34 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0235992 INFO: Points where local peeks in curvature occur are 66 92 65 (curv = 0.0416856) 65 109 50 (curv = 0.0506294) INFO: Intermediate dominant points are 63 83 73 66 92 65 66 104 55 68 115 44 INFO: Final dominant points are 63 83 73 66 92 65 65 109 50 68 115 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 83 73 66 93 64 66 104 55 68 115 44 INFO: Distances between consecutive points are 14 14 16 INFO: Selected control points in test subject's space are 50 53 11 51 57 7 51 61 4 53 65 1 INFO: Distances between consecutive points in test subject's space are 6 5 5 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0417707 INFO: Points where local peeks in curvature occur are 65 91 65 (curv = 0.0636784) 60 115 45 (curv = 0.0932838) INFO: Intermediate dominant points are 61 84 68 65 98 59 60 115 45 57 125 46 INFO: Final dominant points are 61 84 68 61 108 49 60 115 45 57 125 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 65 98 59 61 110 47 57 125 46 INFO: Distances between consecutive points are 17 17 16 INFO: Selected control points in test subject's space are 49 53 9 51 59 6 49 63 2 47 71 0 INFO: Distances between consecutive points in test subject's space are 7 6 8 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 31 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.0233767 INFO: Points where local peeks in curvature occur are 66 94 61 (curv = 0.0456123) 65 100 54 (curv = 0.0256099) INFO: Intermediate dominant points are 64 84 69 66 94 61 64 103 52 63 112 44 INFO: Final dominant points are 64 84 69 66 94 61 63 107 48 63 112 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 84 69 66 94 61 64 103 52 63 112 44 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 50 53 9 51 57 7 50 60 4 50 64 1 INFO: Distances between consecutive points in test subject's space are 5 4 5 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 28 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.0152132 INFO: Points where local peeks in curvature occur are 66 92 62 (curv = 0.0327373) 64 107 48 (curv = 0.0207567) INFO: Intermediate dominant points are 64 85 69 66 92 62 65 103 52 64 112 44 INFO: Final dominant points are 64 85 69 66 92 62 64 107 48 64 112 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 85 69 66 94 61 65 103 52 64 112 44 INFO: Distances between consecutive points are 12 13 12 INFO: Selected control points in test subject's space are 50 53 9 51 57 7 51 60 4 51 64 1 INFO: Distances between consecutive points in test subject's space are 5 4 5 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 32 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0272788 INFO: Points where local peeks in curvature occur are 65 106 53 (curv = 0.0557168) INFO: Intermediate dominant points are 65 88 68 65 99 61 65 106 53 60 117 44 INFO: Final dominant points are 65 88 68 65 101 59 65 106 53 60 117 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 88 68 65 98 61 65 107 52 60 117 44 INFO: Distances between consecutive points are 12 13 14 INFO: Selected control points in test subject's space are 51 55 9 51 59 6 51 62 3 49 66 0 INFO: Distances between consecutive points in test subject's space are 5 4 5 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 33 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0328895 INFO: Points where local peeks in curvature occur are 66 93 66 (curv = 0.0666094) 66 108 51 (curv = 0.0485372) INFO: Intermediate dominant points are 63 87 69 66 98 62 66 108 51 61 117 43 INFO: Final dominant points are 63 87 69 66 103 58 66 108 51 61 117 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 87 69 66 97 63 66 107 54 61 117 43 INFO: Distances between consecutive points are 12 13 16 INFO: Selected control points in test subject's space are 50 54 9 51 58 7 51 62 4 49 66 0 INFO: Distances between consecutive points in test subject's space are 5 5 6 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 31 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.0208421 INFO: Points where local peeks in curvature occur are 70 90 69 (curv = 0.0264709) 68 95 62 (curv = 0.0322372) 63 101 56 (curv = 0.0248266) INFO: Intermediate dominant points are 72 87 75 68 95 62 63 102 55 57 112 47 INFO: Final dominant points are 72 87 75 68 95 62 60 107 51 57 112 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 87 75 69 94 64 63 102 55 57 112 47 INFO: Distances between consecutive points are 13 13 14 INFO: Selected control points in test subject's space are 54 55 11 53 57 7 50 60 4 47 64 2 INFO: Distances between consecutive points in test subject's space are 5 5 5 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 29 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.0200751 INFO: Points where local peeks in curvature occur are 65 90 65 (curv = 0.0375783) 65 101 54 (curv = 0.0237226) INFO: Intermediate dominant points are 63 85 69 65 95 61 65 101 54 64 113 45 INFO: Final dominant points are 63 85 69 65 96 60 65 101 54 64 113 45 INFO: Selected control points are 63 85 69 65 95 59 63 99 54 64 113 45 INFO: Distances between consecutive points are 14 7 17 INFO: Selected control points in test subject's space are 50 53 9 51 57 6 50 59 4 51 65 1 INFO: Distances between consecutive points in test subject's space are 5 3 7 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 9.8 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 167 streamlines for straying off mask INFO: Rejected 709 streamlines for reversing direction INFO: Rejected 46 streamlines as length outliers INFO: Have 9345 total streamlines (min/mean/max length: 20/59/101) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3878 non-truncated streamlines (min/mean/max length: 26/65/101) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (141+/-10, 84+/-10, 111+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50914 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 74 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.06417 INFO: Points where local peeks in curvature occur are 130 118 99 (curv = 0.121436) 128 97 103 (curv = 0.0643567) 128 89 102 (curv = 0.148588) INFO: Intermediate dominant points are 151 132 97 130 118 99 129 103 102 128 89 102 150 86 113 INFO: Final dominant points are 151 132 97 130 118 99 129 99 103 128 89 102 150 86 113 INFO: Selected control points are 151 132 97 131 117 98 129 100 103 128 87 102 150 86 113 INFO: Distances between consecutive points are 25 18 13 25 INFO: Selected control points in test subject's space are 93 77 14 83 70 16 82 62 18 81 56 19 92 56 22 INFO: Distances between consecutive points in test subject's space are 12 8 6 11 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 45.406 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 214 streamlines for straying off mask INFO: Rejected 426 streamlines for reversing direction INFO: Rejected 100 streamlines as length outliers INFO: Have 14882 total streamlines (min/mean/max length: 18/64/99) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6557 non-truncated streamlines (min/mean/max length: 27/69/102) INFO: Center of mass of start points: (34+/-8, 130+/-6, 98+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (39+/-9, 81+/-10, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 66911 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0605977 INFO: Points where local peeks in curvature occur are 40 123 95 (curv = 0.0756807) 51 118 101 (curv = 0.0874053) 54 111 103 (curv = 0.077998) 53 97 106 (curv = 0.0608137) 52 79 102 (curv = 0.133891) INFO: Intermediate dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Final dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Selected control points are 31 131 96 51 117 100 54 98 106 52 79 102 42 73 114 INFO: Distances between consecutive points are 25 20 20 17 INFO: Selected control points in test subject's space are 35 79 14 44 72 16 45 63 19 44 54 19 39 52 22 INFO: Distances between consecutive points in test subject's space are 12 10 9 6 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 127.419 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 320 streamlines for straying off mask INFO: Rejected 80 streamlines for reversing direction INFO: Rejected 68 streamlines as length outliers INFO: Have 7426 total streamlines (min/mean/max length: 33/90/134) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4819 non-truncated streamlines (min/mean/max length: 40/92/134) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 46556 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0494031 INFO: Points where local peeks in curvature occur are 130 118 98 (curv = 0.112622) 125 87 100 (curv = 0.0939046) 128 81 94 (curv = 0.0846298) 135 81 74 (curv = 0.072545) INFO: Intermediate dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Final dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Selected control points are 148 133 85 131 117 99 127 87 100 133 82 74 150 93 57 INFO: Distances between consecutive points are 27 30 27 26 INFO: Selected control points in test subject's space are 91 76 11 83 70 16 81 56 18 84 51 11 92 54 6 INFO: Distances between consecutive points in test subject's space are 11 14 9 10 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 42.018 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 44 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 3051 total streamlines (min/mean/max length: 46/90/141) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1581 non-truncated streamlines (min/mean/max length: 55/91/143) INFO: Center of mass of start points: (40+/-9, 135+/-8, 97+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 32465 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.057567 INFO: Points where local peeks in curvature occur are 53 126 94 (curv = 0.169117) 57 98 102 (curv = 0.0997653) 51 85 95 (curv = 0.0815488) 48 81 82 (curv = 0.0588011) INFO: Intermediate dominant points are 31 138 86 53 126 94 57 98 102 48 81 82 27 86 70 INFO: Final dominant points are 31 138 86 53 126 94 57 98 102 48 81 82 27 86 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 138 86 53 123 96 57 99 101 49 81 84 27 86 70 INFO: Distances between consecutive points are 28 25 26 27 INFO: Selected control points in test subject's space are 35 81 11 45 74 14 47 63 17 43 53 14 32 55 9 INFO: Distances between consecutive points in test subject's space are 13 12 11 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498729 INFO: Points where local peeks in curvature occur are 53 119 100 (curv = 0.0848449) 54 100 104 (curv = 0.0786155) 53 82 92 (curv = 0.0664417) 47 80 79 (curv = 0.058139) INFO: Intermediate dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 INFO: Final dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 95 53 116 100 55 94 102 48 80 82 27 90 71 INFO: Distances between consecutive points are 24 22 25 26 INFO: Selected control points in test subject's space are 36 78 14 45 71 16 46 61 18 42 52 13 32 57 9 INFO: Distances between consecutive points in test subject's space are 12 10 11 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.050069 INFO: Points where local peeks in curvature occur are 52 121 99 (curv = 0.130207) 54 98 103 (curv = 0.0745749) 53 83 93 (curv = 0.0644416) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 INFO: Final dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 99 54 96 103 49 80 84 28 90 70 INFO: Distances between consecutive points are 25 22 25 27 INFO: Selected control points in test subject's space are 35 77 13 45 72 16 45 62 18 43 53 14 33 57 9 INFO: Distances between consecutive points in test subject's space are 12 10 10 12 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0525215 INFO: Points where local peeks in curvature occur are 50 121 99 (curv = 0.0879324) 54 99 104 (curv = 0.0865024) 53 82 92 (curv = 0.0741171) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 INFO: Final dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 94 102 48 80 83 28 90 70 INFO: Distances between consecutive points are 23 21 24 26 INFO: Selected control points in test subject's space are 37 77 13 45 71 16 45 61 18 42 52 13 33 57 9 INFO: Distances between consecutive points in test subject's space are 10 10 11 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522708 INFO: Points where local peeks in curvature occur are 52 118 100 (curv = 0.0976288) 53 100 104 (curv = 0.0762681) 54 97 103 (curv = 0.0775172) 53 83 93 (curv = 0.068704) 50 80 86 (curv = 0.0639931) INFO: Intermediate dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 INFO: Final dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 95 103 49 80 84 32 90 69 INFO: Distances between consecutive points are 23 20 25 25 INFO: Selected control points in test subject's space are 37 77 13 45 71 16 45 62 18 43 53 14 35 56 9 INFO: Distances between consecutive points in test subject's space are 10 9 10 10 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0457292 INFO: Points where local peeks in curvature occur are 56 119 104 (curv = 0.0984498) 56 106 105 (curv = 0.0546334) 48 84 96 (curv = 0.11762) 43 83 79 (curv = 0.0544946) INFO: Intermediate dominant points are 36 136 105 56 119 104 54 97 103 48 84 96 32 81 69 INFO: Final dominant points are 36 136 105 56 119 104 53 94 102 48 84 96 32 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 105 55 120 104 55 98 103 46 83 90 32 81 69 INFO: Distances between consecutive points are 25 22 22 25 INFO: Selected control points in test subject's space are 37 82 16 46 74 17 46 63 18 41 55 15 35 52 9 INFO: Distances between consecutive points in test subject's space are 12 11 10 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0496433 INFO: Points where local peeks in curvature occur are 55 119 104 (curv = 0.0860674) 55 107 105 (curv = 0.0605391) 48 85 98 (curv = 0.0922409) 47 82 92 (curv = 0.0857684) INFO: Intermediate dominant points are 36 136 105 55 119 104 48 85 98 46 83 87 32 81 69 INFO: Final dominant points are 36 136 105 55 119 104 48 85 98 42 83 76 32 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 105 56 118 104 54 96 103 46 83 87 32 81 69 INFO: Distances between consecutive points are 27 22 22 23 INFO: Selected control points in test subject's space are 37 82 16 47 73 17 45 62 18 42 54 14 35 52 9 INFO: Distances between consecutive points in test subject's space are 13 11 9 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0483508 INFO: Points where local peeks in curvature occur are 54 119 103 (curv = 0.0684585) 57 108 104 (curv = 0.0547259) 57 96 102 (curv = 0.0625916) 54 90 97 (curv = 0.0779447) 52 87 88 (curv = 0.0610537) 45 84 80 (curv = 0.052824) INFO: Intermediate dominant points are 36 137 108 54 119 103 57 101 103 54 90 97 34 82 75 INFO: Final dominant points are 36 137 108 54 119 103 57 99 103 54 90 97 34 82 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 108 53 122 103 57 103 103 53 87 92 34 82 75 INFO: Distances between consecutive points are 23 19 20 26 INFO: Selected control points in test subject's space are 37 83 17 45 75 16 47 65 18 45 57 16 36 53 11 INFO: Distances between consecutive points in test subject's space are 11 10 8 11 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0483215 INFO: Points where local peeks in curvature occur are 53 118 101 (curv = 0.0727789) 56 106 103 (curv = 0.0522978) 56 95 101 (curv = 0.0831077) 53 88 94 (curv = 0.0654268) 51 86 87 (curv = 0.086396) 43 83 81 (curv = 0.0565579) INFO: Intermediate dominant points are 31 136 102 53 118 101 56 98 102 51 86 87 27 82 77 INFO: Final dominant points are 31 136 102 53 118 101 54 91 98 51 86 87 27 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 136 102 52 120 101 56 99 102 50 86 86 27 82 77 INFO: Distances between consecutive points are 26 21 21 25 INFO: Selected control points in test subject's space are 35 82 15 45 74 16 46 63 18 43 56 14 32 53 12 INFO: Distances between consecutive points in test subject's space are 13 11 9 12 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0494304 INFO: Points where local peeks in curvature occur are 51 122 102 (curv = 0.0648488) 54 90 99 (curv = 0.0686011) 53 86 91 (curv = 0.0627353) 46 83 82 (curv = 0.0916777) INFO: Intermediate dominant points are 35 134 107 51 122 102 54 90 99 46 83 82 30 82 78 INFO: Final dominant points are 35 134 107 51 122 102 54 90 99 46 83 82 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 134 107 54 117 103 56 98 103 50 84 85 30 82 78 INFO: Distances between consecutive points are 26 19 24 21 INFO: Selected control points in test subject's space are 37 81 17 46 72 17 46 63 18 43 55 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 13 9 9 9 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0520637 INFO: Points where local peeks in curvature occur are 53 118 102 (curv = 0.0571021) 55 94 102 (curv = 0.0744014) 53 85 90 (curv = 0.0582501) 45 83 81 (curv = 0.105338) INFO: Intermediate dominant points are 41 128 102 53 118 102 55 94 102 45 83 81 27 81 77 INFO: Final dominant points are 41 128 102 53 118 102 55 94 102 45 83 81 27 81 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 128 102 55 112 103 55 93 101 47 83 83 27 81 77 INFO: Distances between consecutive points are 21 19 22 21 INFO: Selected control points in test subject's space are 39 78 16 46 70 17 46 60 18 42 54 13 32 53 12 INFO: Distances between consecutive points in test subject's space are 11 10 9 10 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0479461 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0808269) 57 106 103 (curv = 0.0504319) 57 97 102 (curv = 0.0734961) 54 89 95 (curv = 0.0768347) 51 87 87 (curv = 0.0627847) 43 84 80 (curv = 0.0808722) INFO: Intermediate dominant points are 35 139 105 55 119 101 54 89 95 43 84 80 30 82 77 INFO: Final dominant points are 35 139 105 55 119 101 54 89 95 43 84 80 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 139 105 54 122 101 58 101 102 51 87 86 30 82 77 INFO: Distances between consecutive points are 26 21 22 23 INFO: Selected control points in test subject's space are 37 84 16 46 74 16 47 64 17 44 56 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 13 10 9 11 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0481487 INFO: Points where local peeks in curvature occur are 55 118 101 (curv = 0.0776322) 58 99 102 (curv = 0.0651278) 54 89 95 (curv = 0.0734738) 51 87 87 (curv = 0.0627847) 43 84 80 (curv = 0.0808722) INFO: Intermediate dominant points are 35 139 105 55 118 101 54 89 95 43 84 80 30 82 77 INFO: Final dominant points are 35 139 105 55 118 101 54 89 95 43 84 80 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 139 105 54 122 101 58 101 103 51 87 86 30 82 77 INFO: Distances between consecutive points are 26 21 23 23 INFO: Selected control points in test subject's space are 37 84 16 46 74 16 47 64 18 44 56 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 13 10 9 11 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0487978 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0629554) 57 106 103 (curv = 0.0527963) 57 96 101 (curv = 0.0709376) 53 89 95 (curv = 0.073257) 51 87 87 (curv = 0.068027) 45 84 81 (curv = 0.0582999) INFO: Intermediate dominant points are 36 137 104 55 119 101 57 100 102 53 89 95 30 82 77 INFO: Final dominant points are 36 137 104 55 119 101 57 100 102 53 89 95 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 104 55 119 101 57 100 102 50 86 85 30 82 77 INFO: Distances between consecutive points are 26 19 23 22 INFO: Selected control points in test subject's space are 37 82 16 46 73 16 47 64 18 43 56 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 13 9 10 10 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0521736 INFO: Points where local peeks in curvature occur are 52 120 101 (curv = 0.0769973) 55 97 102 (curv = 0.104075) 52 89 96 (curv = 0.0829456) 51 87 87 (curv = 0.0942357) 43 84 81 (curv = 0.0761481) INFO: Intermediate dominant points are 33 139 105 52 120 101 55 97 102 43 84 81 27 83 77 INFO: Final dominant points are 33 139 105 52 120 101 55 97 102 43 84 81 27 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 139 105 52 121 100 55 100 102 50 87 86 27 83 77 INFO: Distances between consecutive points are 27 21 21 25 INFO: Selected control points in test subject's space are 36 84 16 45 74 16 46 64 18 43 56 14 32 54 12 INFO: Distances between consecutive points in test subject's space are 13 10 9 11 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0554905 INFO: Points where local peeks in curvature occur are 48 125 102 (curv = 0.0611709) 54 118 103 (curv = 0.0692522) 57 103 103 (curv = 0.0568467) 55 93 100 (curv = 0.0600496) 53 89 96 (curv = 0.0657683) 52 86 88 (curv = 0.0645745) 45 84 81 (curv = 0.118238) INFO: Intermediate dominant points are 35 136 108 54 118 103 53 89 96 45 84 81 30 82 78 INFO: Final dominant points are 35 136 108 54 118 103 53 89 96 45 84 81 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 136 108 53 119 103 56 99 102 50 85 85 30 82 78 INFO: Distances between consecutive points are 25 20 23 21 INFO: Selected control points in test subject's space are 37 82 17 45 73 17 46 63 18 43 55 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 12 10 9 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0476541 INFO: Points where local peeks in curvature occur are 55 120 101 (curv = 0.094551) 57 106 103 (curv = 0.0605674) 57 96 101 (curv = 0.0735219) 53 89 95 (curv = 0.054424) 50 87 86 (curv = 0.0558639) INFO: Intermediate dominant points are 36 137 103 55 120 101 57 96 101 50 87 86 34 83 72 INFO: Final dominant points are 36 137 103 55 120 101 57 96 101 50 87 86 34 83 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 103 54 121 101 57 103 103 52 88 89 34 83 72 INFO: Distances between consecutive points are 24 18 21 25 INFO: Selected control points in test subject's space are 37 82 15 46 74 16 47 65 18 44 57 15 36 53 10 INFO: Distances between consecutive points in test subject's space are 12 9 9 10 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0519686 INFO: Points where local peeks in curvature occur are 54 117 102 (curv = 0.0706194) 56 97 103 (curv = 0.0657459) 54 89 97 (curv = 0.083144) 52 85 87 (curv = 0.0762774) 43 83 80 (curv = 0.0863011) INFO: Intermediate dominant points are 41 128 103 54 117 102 54 89 97 43 83 80 30 82 78 INFO: Final dominant points are 41 128 103 54 117 102 54 89 97 43 83 80 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 128 103 55 113 103 55 94 101 49 84 85 30 82 78 INFO: Distances between consecutive points are 21 19 20 20 INFO: Selected control points in test subject's space are 39 78 16 46 70 17 46 61 18 43 55 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 11 9 8 9 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0518764 INFO: Points where local peeks in curvature occur are 54 118 102 (curv = 0.0750082) 57 104 103 (curv = 0.0673786) 53 90 96 (curv = 0.074314) 50 87 86 (curv = 0.0641537) 43 84 79 (curv = 0.0872907) INFO: Intermediate dominant points are 35 135 102 54 118 102 53 90 96 43 84 79 30 83 77 INFO: Final dominant points are 35 135 102 54 118 102 53 90 96 43 84 79 30 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 135 102 54 118 102 57 99 102 51 88 87 30 83 77 INFO: Distances between consecutive points are 25 19 20 24 INFO: Selected control points in test subject's space are 37 81 15 46 73 16 47 63 18 44 57 14 34 54 12 INFO: Distances between consecutive points in test subject's space are 12 10 8 11 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0524185 INFO: Points where local peeks in curvature occur are 54 117 102 (curv = 0.0711163) 56 96 102 (curv = 0.0779905) 54 89 97 (curv = 0.0842739) 52 85 87 (curv = 0.072542) 43 83 80 (curv = 0.0964027) INFO: Intermediate dominant points are 41 128 102 54 117 102 54 89 97 43 83 80 30 82 78 INFO: Final dominant points are 41 128 102 54 117 102 54 89 97 43 83 80 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 128 102 55 113 103 55 94 101 49 85 85 30 82 78 INFO: Distances between consecutive points are 21 19 19 20 INFO: Selected control points in test subject's space are 39 78 16 46 70 17 46 61 18 43 55 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 11 9 8 9 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0506414 INFO: Points where local peeks in curvature occur are 53 118 102 (curv = 0.0696189) 56 96 102 (curv = 0.0886455) 53 88 95 (curv = 0.0637873) 53 86 90 (curv = 0.0708244) 45 84 81 (curv = 0.0790214) INFO: Intermediate dominant points are 40 130 104 53 118 102 56 96 102 45 84 81 27 82 77 INFO: Final dominant points are 40 130 104 53 118 102 56 96 102 45 84 81 27 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 130 104 54 114 103 56 95 102 49 84 84 27 82 77 INFO: Distances between consecutive points are 21 19 22 23 INFO: Selected control points in test subject's space are 39 79 16 46 71 17 46 61 18 43 55 14 32 53 12 INFO: Distances between consecutive points in test subject's space are 11 10 8 11 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0524692 INFO: Points where local peeks in curvature occur are 54 118 101 (curv = 0.0957564) 56 99 102 (curv = 0.0918956) 54 93 99 (curv = 0.0682369) 47 85 82 (curv = 0.0792607) INFO: Intermediate dominant points are 32 140 104 54 118 101 56 99 102 47 85 82 27 82 77 INFO: Final dominant points are 32 140 104 54 118 101 56 99 102 47 85 82 27 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 140 104 51 122 100 56 100 102 50 87 85 27 82 77 INFO: Distances between consecutive points are 26 23 22 25 INFO: Selected control points in test subject's space are 35 84 16 44 74 16 46 64 18 43 56 14 32 53 12 INFO: Distances between consecutive points in test subject's space are 13 10 9 12 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522252 INFO: Points where local peeks in curvature occur are 45 126 103 (curv = 0.0619513) 54 118 103 (curv = 0.0755984) 57 100 103 (curv = 0.0609776) 54 90 97 (curv = 0.0734852) 51 86 88 (curv = 0.0583922) 45 84 81 (curv = 0.0810162) INFO: Intermediate dominant points are 35 136 108 54 118 103 54 90 97 45 84 81 27 82 77 INFO: Final dominant points are 35 136 108 54 118 103 54 90 97 45 84 81 27 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 136 108 54 118 103 56 98 102 49 85 85 27 82 77 INFO: Distances between consecutive points are 27 20 23 24 INFO: Selected control points in test subject's space are 37 82 17 46 73 17 46 63 18 43 55 14 32 53 12 INFO: Distances between consecutive points in test subject's space are 13 10 9 11 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0493989 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0632585) 58 101 102 (curv = 0.0558445) 57 97 102 (curv = 0.0633297) 53 88 94 (curv = 0.0709756) 51 87 87 (curv = 0.0574877) 44 84 80 (curv = 0.0611981) INFO: Intermediate dominant points are 37 136 105 55 119 101 58 101 102 53 88 94 30 82 77 INFO: Final dominant points are 37 136 105 55 119 101 58 101 102 53 88 94 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 136 105 55 119 101 58 101 102 51 87 87 30 82 77 INFO: Distances between consecutive points are 25 18 22 24 INFO: Selected control points in test subject's space are 38 82 16 46 73 16 47 64 17 44 56 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 12 9 9 11 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0505912 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0888167) 58 101 103 (curv = 0.0610234) 55 92 99 (curv = 0.079895) 52 87 88 (curv = 0.0567217) 43 84 80 (curv = 0.0679533) INFO: Intermediate dominant points are 37 137 105 55 119 101 55 92 99 43 84 80 30 82 77 INFO: Final dominant points are 37 137 105 55 119 101 55 92 99 43 84 80 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 137 105 55 120 101 58 101 103 52 87 88 30 82 77 INFO: Distances between consecutive points are 25 19 21 25 INFO: Selected control points in test subject's space are 38 83 16 46 73 16 47 64 18 44 56 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 13 9 9 11 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509957 INFO: Points where local peeks in curvature occur are 53 118 101 (curv = 0.0806195) 56 97 101 (curv = 0.0841143) 53 90 96 (curv = 0.0808724) 50 87 86 (curv = 0.0716954) 45 85 81 (curv = 0.0784582) INFO: Intermediate dominant points are 34 140 106 53 118 101 56 97 101 45 85 81 27 83 77 INFO: Final dominant points are 34 140 106 53 118 101 56 97 101 45 85 81 27 83 77 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 106 51 122 100 56 100 102 49 87 85 27 83 77 INFO: Distances between consecutive points are 25 23 23 24 INFO: Selected control points in test subject's space are 36 84 16 44 74 16 46 64 18 43 56 14 32 54 12 INFO: Distances between consecutive points in test subject's space are 13 10 9 11 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0510461 INFO: Points where local peeks in curvature occur are 54 117 102 (curv = 0.0757308) 56 95 101 (curv = 0.083521) 52 86 88 (curv = 0.0879095) 45 84 81 (curv = 0.0816488) INFO: Intermediate dominant points are 41 130 102 54 117 102 56 95 101 52 86 88 30 82 78 INFO: Final dominant points are 41 130 102 54 117 102 54 90 98 52 86 88 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 130 102 55 114 103 56 96 102 50 85 85 30 82 78 INFO: Distances between consecutive points are 21 18 21 21 INFO: Selected control points in test subject's space are 39 79 16 46 71 17 46 62 18 43 55 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 11 9 9 9 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 78 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0503259 INFO: Points where local peeks in curvature occur are 55 118 102 (curv = 0.0738944) 57 97 102 (curv = 0.0768896) 53 89 95 (curv = 0.0774534) 51 87 86 (curv = 0.064262) 44 84 80 (curv = 0.0713094) INFO: Intermediate dominant points are 37 136 106 55 118 102 57 98 102 53 89 95 30 82 77 INFO: Final dominant points are 37 136 106 55 118 102 57 98 102 53 89 95 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 136 106 54 119 102 57 99 102 51 87 86 30 82 77 INFO: Distances between consecutive points are 24 20 21 23 INFO: Selected control points in test subject's space are 38 82 16 46 73 16 47 63 18 44 56 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 12 10 9 11 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0527402 INFO: Points where local peeks in curvature occur are 47 125 102 (curv = 0.0598484) 54 118 103 (curv = 0.0798248) 56 96 102 (curv = 0.0762018) 53 88 93 (curv = 0.0559739) 48 85 83 (curv = 0.0817828) 41 83 80 (curv = 0.0541723) INFO: Intermediate dominant points are 36 135 108 54 118 103 56 96 102 48 85 83 30 82 78 INFO: Final dominant points are 36 135 108 54 118 103 56 96 102 48 85 83 30 82 78 INFO: Selected control points are 36 135 108 54 118 102 56 96 102 48 84 84 30 82 78 INFO: Distances between consecutive points are 25 22 23 19 INFO: Selected control points in test subject's space are 37 82 17 46 73 16 46 62 18 42 55 14 34 53 12 INFO: Distances between consecutive points in test subject's space are 13 11 9 8 Writing output files to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 13.184 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Mon Jul 7 14:06:36 PDT 2014 New invocation of trac-all Mon Jul 7 16:43:46 PDT 2014 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI /usr/local/freesurfer/bin/trac-all -prep -c /home/image/freesurfer/tracula/CIFASDII_T1-DTI/dmrirc.CIFASDII_T1-DTI Subject call1285_CIFASDII_T1_021210 SUBJECTS_DIR /home/image/FASD/Shared/freesurfer/subjects/CIFASDII_T1 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 image brain Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127973 maxlocks unlimited maxsignal 127973 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16398256 15750552 647704 0 136604 5075092 -/+ buffers/cache: 10538856 5859400 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-23:43:46-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-23:43:46-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-23:43:46-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-23:43:46-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2014/07/07-23:43:46-GMT BuildTimeStamp: May 13 2013 18:45:07 CVS: User: image Machine: brain Platform: Linux PlatformVersion: 3.2.0-61-generic CompilerName: GCC CompilerVersion: 30400 New invocation of trac-preproc image brain Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127973 maxlocks unlimited maxsignal 127973 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16398256 15750744 647512 0 136604 5075092 -/+ buffers/cache: 10539048 5859208 Swap: 0 0 0 #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Mon Jul 7 16:43:46 PDT 2014 mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1... Starting DICOMRead2() dcmfile = /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 dcmdir = /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205 Ref Series No = 8 Found 1149 files, checking for dicoms Found 1147 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 3 Vs: 0 0 1 Second Sorting Counting frames nframes = 31 nslices = 37 ndcmfiles = 1147 PE Dir = COL (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- Loading pixel data TR=13000.00, TE=98.50, TI=0.00, flip angle=90.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz... mri_probedicom --i /home/image/FASD/call1285/call1285_dti_021210/raw/s3851205/i00001.CFMRI.1 > /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dcminfo.dat cp /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/bvecs /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvecs cp /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/bvals /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvals flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 10.5469 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.nii.gz x -y z /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz INFO: found /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.mghdti.bvecs /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.mghdti.bvals /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvals eddy_correct /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_orig_flip.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz 0 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0000 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0001 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0002 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0003 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0004 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0005 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0006 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0007 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0008 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0009 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0010 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0011 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0012 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0013 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0014 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0015 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0016 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0017 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0018 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0019 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0020 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0021 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0022 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0023 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0024 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0025 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0026 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0027 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0028 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0029 processing /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_tmp0030 mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs.norot xfmrot /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.ecclog /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs.norot /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/bvecs mv -f /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_eddy.nii.gz mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3850907/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3850907/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/call1285/call1285_dti_021210/raw/s3850907/i00001.CFMRI.1... Starting DICOMRead2() dcmfile = /home/image/FASD/call1285/call1285_dti_021210/raw/s3850907/i00001.CFMRI.1 dcmdir = /home/image/FASD/call1285/call1285_dti_021210/raw/s3850907 Ref Series No = 6 Found 150 files, checking for dicoms Found 148 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 3 Vs: 0 0 1 Second Sorting Counting frames nframes = 4 nslices = 37 ndcmfiles = 148 PE Dir = COL (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- Loading pixel data TR=1000.00, TE=3.90, TI=0.00, flip angle=60.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz... flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 10.5469 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz x -y z /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0mag.nii.gz mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3851056/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz mri_convert /home/image/FASD/call1285/call1285_dti_021210/raw/s3851056/i00001.CFMRI.1 /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/image/FASD/call1285/call1285_dti_021210/raw/s3851056/i00001.CFMRI.1... Starting DICOMRead2() dcmfile = /home/image/FASD/call1285/call1285_dti_021210/raw/s3851056/i00001.CFMRI.1 dcmdir = /home/image/FASD/call1285/call1285_dti_021210/raw/s3851056 Ref Series No = 7 Found 150 files, checking for dicoms Found 148 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 3 Vs: 0 0 1 Second Sorting Counting frames nframes = 4 nslices = 37 ndcmfiles = 148 PE Dir = COL (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- Loading pixel data TR=1000.00, TE=5.50, TI=0.00, flip angle=60.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz... flip4fsl /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 10.5469 fslswapdim /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz x -y z /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0pha.nii.gz mri_probedicom --i /home/image/FASD/call1285/call1285_dti_021210/raw/s3851056/i00001.CFMRI.1 > /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/b0info.dat fslroi /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/dwi_eddy.nii.gz /home/image/FASD/Shared/freesurfer/tracula/CIFASDII_T1-DTI/call1285_CIFASDII_T1_021210/dmri/lowb.nii.gz 0 1 Linux brain 3.2.0-61-generic #92-Ubuntu SMP Mon Mar 31 23:47:59 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Mon Jul 7 16:48:17 PDT 2014