PHS009090:freesurfer pnlmcleaneeg$ bash extractYeo17.sh /Volumes/SY_MRI/freesurfer/recon_unedited sub-001_ses-01 Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-001_ses-01 --hemi lh --sval-annot fsaverage5/label/lh.Yeo2011_17Networks_N1000.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/lh.Yeo2011_17Networks_N1000.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-001_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/lh.Yeo2011_17Networks_N1000.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.orig reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (134953) Surf2Surf: Dividing by number of hits (134953) INFO: nSrcLost = 0 nTrg121 = 134953, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 1, nSrcLost = 0, nSrcMulti = 10241, MnSrcMultiHits = 13.1776 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/lh.Yeo2011_17Networks_N1000.annot Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-001_ses-01 --hemi lh --sval-annot fsaverage5/label/lh.Yeo2011_17Networks_N1000.split_components.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/lh.Yeo2011_17Networks_split.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-001_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/lh.Yeo2011_17Networks_split.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.orig reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (134953) Surf2Surf: Dividing by number of hits (134953) INFO: nSrcLost = 0 nTrg121 = 134953, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 1, nSrcLost = 0, nSrcMulti = 10241, MnSrcMultiHits = 13.1776 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/lh.Yeo2011_17Networks_split.annot INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-001_ses-01/label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-001_ses-01/label/lh.Yeo2011_17Networks_N1000.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.white... Using TH3 vertex volume calc Total face volume 252202 Total vertex volume 248594 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.white... reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Saving annotation colortable sub-001_ses-01/label/lh.Yeo_17Networks.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ############# ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/sub-001_ses-01/label/lh.Yeo2011_17Networks_N1000.annot atlas_icv (eTIV) = 1636252 mm^3 (det: 1.190590 ) computing (and caching) brain volume statistics ComputeBrainVolumeStats using version with fixed volume (VoxelVol=1) lhCtxGM: 247833.745 (247410.000) diff= 423.7 pctdiff= 0.171 rhCtxGM: 243244.171 (243051.000) diff= 193.2 pctdiff= 0.079 lhCtxWM: 254127.207 (253936.000) diff= 191.2 pctdiff= 0.075 rhCtxWM: 249922.704 (250917.000) diff= -994.3 pctdiff=-0.398 SubCortGMVol 61111.000 SupraTentVol: 1071693.828 (1069672.000) diff= 2021.8 pctdiff= 0.189 SupraTentVolNotVent: 1058485.828 (1056464.000) diff= 2021.8 pctdiff= 0.191 BrainSegVol: 1219407.000 (1216197.000) diff= 3210.0 pctdiff= 0.263 BrainSegVolNotVent: 1201816.000 (1201470.828) diff= 345.2 pctdiff= 0.029 CerebellumVol 145193.000 VentChorVol 13208.000 3rd4th5thCSF 4383.000 CSFVol 1173.000, OptChiasmVol 159.000 MaskVol 1773782.000 9440 6045 2467 0.949 1.492 0.083 0.027 88 9.4 FreeSurfer_Defined_Medial_Wall 11310 7462 17648 2.204 0.644 0.143 0.034 147 15.4 17Networks_1 8736 5818 11613 1.934 0.606 0.134 0.033 108 11.5 17Networks_2 10838 6888 16562 2.248 0.600 0.117 0.028 97 12.4 17Networks_3 8219 5446 14130 2.494 0.664 0.115 0.027 75 8.6 17Networks_4 7349 5012 12280 2.289 0.570 0.121 0.026 75 7.6 17Networks_5 7534 5051 13018 2.407 0.536 0.122 0.029 78 9.3 17Networks_6 7926 5470 16062 2.768 0.673 0.117 0.029 74 9.4 17Networks_7 5838 4066 12508 2.686 0.719 0.130 0.035 69 8.6 17Networks_8 5452 3872 16795 3.330 0.835 0.139 0.038 82 8.3 17Networks_9 5034 3520 12406 3.024 0.784 0.142 0.039 78 8.4 17Networks_10 2742 1857 4363 2.144 0.696 0.132 0.031 38 3.5 17Networks_11 8425 5703 15407 2.480 0.616 0.128 0.030 103 9.9 17Networks_12 6454 4488 13775 2.656 0.703 0.133 0.035 80 8.8 17Networks_13 3469 2415 8452 2.921 0.675 0.126 0.031 39 4.6 17Networks_14 2570 1729 5634 2.937 0.730 0.117 0.033 28 3.3 17Networks_15 10351 7215 22887 2.755 0.752 0.137 0.034 148 14.8 17Networks_16 13266 9192 32586 2.902 0.702 0.135 0.035 181 19.0 17Networks_17 INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-001_ses-01/label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-001_ses-01/label/lh.Yeo2011_17Networks_split.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.white... Using TH3 vertex volume calc Total face volume 252202 Total vertex volume 248594 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/lh.white... reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Saving annotation colortable sub-001_ses-01/label/lh.Yeo_17Networks_split.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ########### ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/sub-001_ses-01/label/lh.Yeo2011_17Networks_split.annot atlas_icv (eTIV) = 1636252 mm^3 (det: 1.190590 ) 52559 35397 90083 2.312 1.126 0.122 0.032 619 66.1 Background+FreeSurfer_Defined_Medial_Wall 705 467 782 1.671 0.346 0.131 0.037 7 1.0 17Networks_LH_VisCent_Striate 7843 5151 12546 2.274 0.654 0.140 0.033 100 10.2 17Networks_LH_VisCent_ExStr 1551 1075 1708 1.658 0.513 0.118 0.026 13 1.6 17Networks_LH_VisPeri_Striate 1710 1169 2568 2.161 0.636 0.141 0.035 26 2.4 17Networks_LH_VisPeri_ExStrInf 2652 1719 3542 1.953 0.506 0.133 0.030 31 3.0 17Networks_LH_VisPeri_ExStrSup 9161 5745 13875 2.224 0.595 0.119 0.030 87 11.0 17Networks_LH_SomMotA 1967 1265 2754 2.125 0.637 0.100 0.019 14 1.6 17Networks_LH_SomMotB_Cent 1462 1003 2859 2.799 0.690 0.137 0.039 16 2.2 17Networks_LH_SomMotB_S2 71 54 146 2.957 0.356 0.089 0.011 0 0.0 17Networks_LH_SomMotB_Ins 2003 1318 3220 2.399 0.483 0.102 0.021 15 1.5 17Networks_LH_SomMotB_Aud 1572 1051 2638 2.475 0.562 0.130 0.032 17 2.1 17Networks_LH_DorsAttnA_TempOcc 708 507 1352 2.369 0.622 0.124 0.024 7 0.8 17Networks_LH_DorsAttnA_ParOcc 2019 1375 3087 2.029 0.464 0.105 0.021 16 1.5 17Networks_LH_DorsAttnA_SPL 133 108 280 2.275 0.558 0.137 0.031 2 0.2 17Networks_LH_DorsAttnB_TempOcc 3214 2097 5463 2.414 0.517 0.124 0.029 35 3.8 17Networks_LH_DorsAttnB_PostC 1071 774 1729 2.445 0.432 0.113 0.023 7 1.1 17Networks_LH_DorsAttnB_FEF 78 51 171 2.614 0.387 0.101 0.024 1 0.1 17Networks_LH_DorsAttnB_PrCv 1556 1080 3432 2.628 0.619 0.133 0.034 19 2.2 17Networks_LH_SalVentAttnA_ParOper 606 420 1340 2.617 0.584 0.096 0.024 5 0.6 17Networks_LH_SalVentAttnA_PrCv 978 657 2207 3.226 0.877 0.096 0.030 7 1.2 17Networks_LH_SalVentAttnA_Ins 798 539 1083 2.583 0.541 0.119 0.027 5 0.9 17Networks_LH_SalVentAttnA_ParMed 879 623 1996 2.979 0.482 0.139 0.031 12 1.1 17Networks_LH_SalVentAttnA_FrMed 245 170 305 2.340 0.483 0.099 0.023 1 0.2 17Networks_LH_SalVentAttnB_IPL 29 21 123 3.598 0.523 0.183 0.042 1 0.0 17Networks_LH_SalVentAttnB_PFCd 1628 1172 3424 2.516 0.710 0.144 0.037 22 2.7 17Networks_LH_SalVentAttnB_PFCl 556 400 1149 2.629 0.647 0.116 0.023 5 0.6 17Networks_LH_SalVentAttnB_PFCv 98 65 277 3.121 0.511 0.139 0.049 1 0.2 17Networks_LH_SalVentAttnB_OFC 578 394 1195 2.926 0.696 0.115 0.030 4 0.7 17Networks_LH_SalVentAttnB_PFCmp 4359 3083 13349 3.346 0.831 0.138 0.037 64 6.6 17Networks_LH_Limbic_TempPole 3936 2741 9612 2.983 0.773 0.142 0.040 63 6.9 17Networks_LH_Limbic_OFC 464 330 875 2.411 0.587 0.147 0.034 8 0.8 17Networks_LH_ContA_Temp 1844 1232 3234 2.295 0.543 0.135 0.030 24 2.3 17Networks_LH_ContA_IPS 182 132 305 2.478 0.440 0.116 0.037 1 0.2 17Networks_LH_ContA_PFCd 1553 1051 2308 2.439 0.482 0.110 0.021 14 1.5 17Networks_LH_ContA_PFCl 477 322 924 2.510 0.648 0.127 0.031 6 0.5 17Networks_LH_ContA_PFClv 61 34 63 2.558 0.351 0.144 0.021 1 0.0 17Networks_LH_ContA_Cinga 280 221 870 2.984 0.582 0.170 0.039 5 0.4 17Networks_LH_ContB_Temp 689 475 1127 2.366 0.498 0.104 0.024 5 0.6 17Networks_LH_ContB_IPL 105 61 340 3.495 0.578 0.159 0.063 2 0.2 17Networks_LH_ContB_PFCd 501 355 969 2.399 0.545 0.120 0.034 6 0.6 17Networks_LH_ContB_PFCl 1341 928 2660 2.477 0.708 0.141 0.034 17 1.9 17Networks_LH_ContB_PFClv 75 59 206 3.140 0.221 0.137 0.031 0 0.1 17Networks_LH_ContB_PFCmp 1035 689 1583 2.092 0.550 0.130 0.034 13 1.6 17Networks_LH_ContC_pCun 438 257 390 1.691 0.519 0.170 0.037 12 0.6 17Networks_LH_ContC_Cingp 883 578 1558 2.365 0.738 0.127 0.027 11 1.0 17Networks_LH_DefaultA_IPL 1352 930 2250 2.470 0.498 0.108 0.022 11 1.2 17Networks_LH_DefaultA_PFCd 2095 1487 4659 2.829 0.713 0.137 0.032 27 2.8 17Networks_LH_DefaultA_PCC 2632 1898 6505 2.888 0.810 0.150 0.042 44 5.1 17Networks_LH_DefaultA_PFCm 3628 2530 8925 2.982 0.760 0.128 0.034 46 4.8 17Networks_LH_DefaultB_Temp 808 535 1536 2.607 0.619 0.114 0.025 8 0.7 17Networks_LH_DefaultB_IPL 2561 1783 6710 3.040 0.694 0.149 0.042 41 4.7 17Networks_LH_DefaultB_PFCd 543 371 1157 2.755 0.456 0.141 0.036 6 0.8 17Networks_LH_DefaultB_PFCl 1662 1183 4465 2.786 0.618 0.149 0.039 30 2.5 17Networks_LH_DefaultB_PFCv 81 52 158 2.533 0.804 0.080 0.019 1 0.1 17Networks_LH_DefaultC_IPL 305 217 512 2.813 0.454 0.120 0.039 3 0.5 17Networks_LH_DefaultC_Rsp 797 531 1761 3.041 0.715 0.105 0.025 6 0.9 17Networks_LH_DefaultC_PHC 1836 1317 4246 2.841 0.656 0.118 0.029 16 2.2 17Networks_LH_TempPar Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-001_ses-01 --hemi rh --sval-annot fsaverage5/label/rh.Yeo2011_17Networks_N1000.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/rh.Yeo2011_17Networks_N1000.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-001_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/rh.Yeo2011_17Networks_N1000.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.orig reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (134397) Surf2Surf: Dividing by number of hits (134397) INFO: nSrcLost = 0 nTrg121 = 134397, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 0, nSrcLost = 0, nSrcMulti = 10242, MnSrcMultiHits = 13.1221 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/rh.Yeo2011_17Networks_N1000.annot Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-001_ses-01 --hemi rh --sval-annot fsaverage5/label/rh.Yeo2011_17Networks_N1000.split_components.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/rh.Yeo2011_17Networks_split.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-001_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/rh.Yeo2011_17Networks_split.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.orig reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (134397) Surf2Surf: Dividing by number of hits (134397) INFO: nSrcLost = 0 nTrg121 = 134397, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 0, nSrcLost = 0, nSrcMulti = 10242, MnSrcMultiHits = 13.1221 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/rh.Yeo2011_17Networks_split.annot INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-001_ses-01/label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-001_ses-01/label/rh.Yeo2011_17Networks_N1000.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.white... Using TH3 vertex volume calc Total face volume 246563 Total vertex volume 243804 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.white... reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Saving annotation colortable sub-001_ses-01/label/rh.Yeo_17Networks.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ############# ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/sub-001_ses-01/label/rh.Yeo2011_17Networks_N1000.annot atlas_icv (eTIV) = 1636252 mm^3 (det: 1.190590 ) 9471 6078 2493 0.882 1.444 0.083 0.028 100 9.3 FreeSurfer_Defined_Medial_Wall 12896 8430 20043 2.230 0.632 0.137 0.032 152 16.8 17Networks_1 8466 5587 12040 2.083 0.612 0.129 0.033 91 11.2 17Networks_2 9327 5772 13576 2.180 0.634 0.108 0.026 74 9.6 17Networks_3 6921 4571 12139 2.522 0.680 0.113 0.027 60 7.5 17Networks_4 9984 6800 17622 2.363 0.633 0.127 0.030 110 12.0 17Networks_5 6263 4217 10468 2.278 0.602 0.117 0.026 60 6.4 17Networks_6 7902 5410 16219 2.678 0.686 0.120 0.031 79 9.6 17Networks_7 7980 5441 16747 2.644 0.723 0.130 0.032 94 10.4 17Networks_8 5740 3923 16117 3.279 0.805 0.133 0.038 77 8.4 17Networks_9 4318 2960 10541 2.886 0.851 0.134 0.038 65 7.3 17Networks_10 3264 2146 5332 2.212 0.654 0.138 0.036 47 4.7 17Networks_11 7347 4968 13311 2.456 0.665 0.126 0.029 86 8.9 17Networks_12 10382 7223 23208 2.655 0.738 0.133 0.034 133 13.8 17Networks_13 4575 3118 9511 2.774 0.672 0.120 0.029 49 5.5 17Networks_14 2445 1633 4814 2.598 0.691 0.112 0.027 24 2.5 17Networks_15 11130 7663 24354 2.662 0.789 0.133 0.034 156 14.6 17Networks_16 5986 4070 15268 2.949 0.737 0.133 0.035 84 8.0 17Networks_17 INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-001_ses-01/label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-001_ses-01/label/rh.Yeo2011_17Networks_split.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.white... Using TH3 vertex volume calc Total face volume 246563 Total vertex volume 243804 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/surf/rh.white... reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Saving annotation colortable sub-001_ses-01/label/rh.Yeo_17Networks_split.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ############## ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-001_ses-01/label/sub-001_ses-01/label/rh.Yeo2011_17Networks_split.annot atlas_icv (eTIV) = 1636252 mm^3 (det: 1.190590 ) 52621 35186 90396 2.278 1.139 0.119 0.031 607 63.3 Background+FreeSurfer_Defined_Medial_Wall 814 487 953 1.888 0.461 0.138 0.041 10 1.3 17Networks_RH_VisCent_Striate 9107 5996 14417 2.276 0.630 0.137 0.031 108 11.3 17Networks_RH_VisCent_ExStr 1349 906 1370 1.771 0.470 0.114 0.028 10 1.6 17Networks_RH_VisPeri_Striate 1632 1051 2639 2.352 0.630 0.134 0.038 21 2.6 17Networks_RH_VisPeri_ExStrInf 2896 1899 4636 2.251 0.552 0.138 0.031 34 3.7 17Networks_RH_VisPeri_ExStrSup 7818 4776 11181 2.147 0.628 0.108 0.026 64 8.2 17Networks_RH_SomMotA 1604 1073 2009 1.908 0.530 0.102 0.022 10 1.5 17Networks_RH_SomMotB_Cent 1367 931 2593 2.784 0.552 0.124 0.035 14 2.0 17Networks_RH_SomMotB_S2 94 70 165 2.649 0.344 0.109 0.017 0 0.1 17Networks_RH_SomMotB_Ins 1548 978 2950 2.705 0.492 0.109 0.023 14 1.3 17Networks_RH_SomMotB_Aud 1791 1251 3306 2.602 0.538 0.142 0.038 20 3.0 17Networks_RH_DorsAttnA_TempOcc 1259 830 2514 2.541 0.614 0.138 0.032 19 1.5 17Networks_RH_DorsAttnA_ParOcc 3082 2078 4563 1.999 0.486 0.120 0.026 30 3.4 17Networks_RH_DorsAttnA_SPL 97 67 135 2.309 0.506 0.079 0.014 1 0.0 17Networks_RH_DorsAttnB_TempOcc 2634 1769 4212 2.210 0.649 0.123 0.026 27 2.9 17Networks_RH_DorsAttnB_PostC 758 525 1091 2.167 0.416 0.110 0.025 6 0.7 17Networks_RH_DorsAttnB_FEF 135 94 331 2.744 0.275 0.120 0.026 2 0.2 17Networks_RH_DorsAttnB_PrCv 1313 867 2343 2.478 0.561 0.120 0.027 15 1.4 17Networks_RH_SalVentAttnA_ParOper 142 85 290 2.762 0.405 0.192 0.131 3 0.9 17Networks_RH_SalVentAttnA_PrC 603 409 1441 2.692 0.579 0.121 0.028 8 0.6 17Networks_RH_SalVentAttnA_PrCv 963 690 2103 3.140 0.727 0.110 0.031 9 1.1 17Networks_RH_SalVentAttnA_Ins 712 493 851 2.189 0.512 0.108 0.018 4 0.6 17Networks_RH_SalVentAttnA_ParMed 1084 757 2309 2.677 0.579 0.135 0.035 11 1.6 17Networks_RH_SalVentAttnA_FrMed 295 220 699 2.912 0.585 0.142 0.033 4 0.3 17Networks_RH_SalVentAttnB_IPL 125 92 280 2.693 0.444 0.144 0.030 1 0.1 17Networks_RH_SalVentAttnB_PFCd 1855 1255 3586 2.486 0.603 0.133 0.036 23 2.6 17Networks_RH_SalVentAttnB_PFCl 246 162 570 2.477 0.583 0.177 0.058 6 0.5 17Networks_RH_SalVentAttnB_PFClv 1082 744 2137 2.825 0.783 0.118 0.025 9 1.1 17Networks_RH_SalVentAttnB_PFCv 783 540 1728 2.755 0.704 0.126 0.031 10 1.0 17Networks_RH_SalVentAttnB_PFCmp 61 33 63 1.944 0.521 0.176 0.024 2 0.1 17Networks_RH_SalVentAttnB_Cinga 4600 3170 13247 3.299 0.797 0.135 0.037 60 6.7 17Networks_RH_Limbic_TempPole 3157 2171 7629 2.819 0.831 0.131 0.039 48 5.4 17Networks_RH_Limbic_OFC 243 177 507 2.450 0.584 0.135 0.021 3 0.2 17Networks_RH_ContA_Temp 1601 1048 2515 2.276 0.649 0.115 0.020 16 1.3 17Networks_RH_ContA_IPS 138 88 318 2.691 0.442 0.157 0.043 3 0.2 17Networks_RH_ContA_PFCd 1805 1236 2914 2.458 0.475 0.113 0.025 15 1.8 17Networks_RH_ContA_PFCl 39 24 21 1.366 0.265 0.147 0.039 1 0.1 17Networks_RH_ContA_Cinga 748 559 1613 2.984 0.584 0.120 0.026 5 0.7 17Networks_RH_ContB_Temp 1193 814 2562 2.503 0.629 0.118 0.027 12 1.3 17Networks_RH_ContB_IPL 1551 1089 3544 2.670 0.669 0.137 0.036 18 2.4 17Networks_RH_ContB_PFCld 2610 1813 5431 2.370 0.687 0.146 0.037 43 4.1 17Networks_RH_ContB_PFClv 223 154 676 3.476 0.435 0.106 0.021 2 0.2 17Networks_RH_ContB_PFCmp 1308 891 2215 2.245 0.547 0.133 0.030 16 1.9 17Networks_RH_ContC_pCun 385 236 313 1.719 0.434 0.170 0.043 9 0.5 17Networks_RH_ContC_Cingp 364 247 906 2.662 0.541 0.136 0.047 6 0.8 17Networks_RH_DefaultA_Temp 1132 787 2178 2.531 0.598 0.131 0.040 15 1.6 17Networks_RH_DefaultA_IPL 1133 767 2357 2.851 0.533 0.114 0.026 11 1.2 17Networks_RH_DefaultA_PFCd 1658 1161 3217 2.545 0.776 0.124 0.024 18 1.6 17Networks_RH_DefaultA_PCC 3289 2253 7150 2.508 0.891 0.136 0.038 51 5.2 17Networks_RH_DefaultA_PFCm 324 249 739 2.628 0.451 0.097 0.017 2 0.2 17Networks_RH_DefaultB_Temp 706 484 1692 2.911 0.762 0.111 0.024 6 0.8 17Networks_RH_DefaultB_AntTemp 1367 881 3803 3.144 0.751 0.137 0.037 20 2.0 17Networks_RH_DefaultB_PFCd 726 493 2065 3.037 0.675 0.165 0.054 17 1.6 17Networks_RH_DefaultB_PFCv 173 127 430 2.416 0.588 0.134 0.023 2 0.1 17Networks_RH_DefaultC_IPL 341 242 687 2.904 0.479 0.109 0.030 3 0.3 17Networks_RH_DefaultC_Rsp 478 323 939 2.634 0.675 0.098 0.025 4 0.4 17Networks_RH_DefaultC_PHC 3235 2210 6275 2.724 0.638 0.120 0.029 33 3.9 17Networks_RH_TempPar