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Hi Rueben,

I am afraid I don't understand your question. The Yeo networks are available in fsaverage and FSL MNI152 space.

If your data is already in fsaverage or FSL MNI152 space, you can simply use the networks directly without running recon-all.

Can you elaborate more on what you are trying to do?

Regards,
Thomas

On Mon, Aug 15, 2022 at 7:20 AM Addison, Reuben <RAddison@mghihp.edu> wrote:
The Yeo et al, 2011 template 

Reuben A.
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Thomas Yeo <ythomas@csail.mit.edu>
Sent: Sunday, August 14, 2022 6:59:51 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Parcellation issue
 

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Hi Reuben,

What template are you trying to use?

Regards,
Thomas 

On Tue, Aug 9, 2022 at 8:39 PM Addison, Reuben <RAddison@mghihp.edu> wrote:

 

I want to use a different template apart from the MNI for my parcellation (Yeo_JNeurophysiol11_FreeSurfer.zip). Below are the instructions given in the readme. My question is – do I need to run this code before Recon-all or after

 

In terminal (ASSUMING shell is bash),

   a) "cd" to unzipped folder containing this README file, fsaverage, fsaverage6, fsaverage5

   b) export SUBJECTS_DIR=`pwd`

   c) tksurfer fsaverage5 lh inflated -annotation fsaverage5/label/lh.Yeo2011_7Networks_N1000.annot

 

 

 

Reuben A.

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