Thu Dec 12 11:35:10 CET 2013 /home/matthieu/SVN/scripts/matthieu /home/global//freesurfer5.1//bin/trac-all -prep -c /home/matthieu/NAS/matthieu/DTI_Alex/dmrirc.tutorial Subject AR28 SUBJECTS_DIR /home/fatmike/renaud/alexis/FS50_ju FREESURFER_HOME /home/global//freesurfer5.1/ Actual FREESURFER_HOME /home/global/freesurfer5.1 build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 matthieu toto Linux toto 3.5.0-43-generic #66-Ubuntu SMP Wed Oct 23 12:01:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 513269 maxlocks unlimited maxsignal 513269 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 65922268 31784092 34138176 0 328020 27506004 -/+ buffers/cache: 3950068 61972200 Swap: 67050492 0 67050492 ######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-10:35:10-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 5.5 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-10:35:10-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-10:35:10-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-10:35:10-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-10:35:10-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 New invocation of trac-preproc matthieu toto Linux toto 3.5.0-43-generic #66-Ubuntu SMP Wed Oct 23 12:01:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 513269 maxlocks unlimited maxsignal 513269 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 65922268 31786380 34135888 0 328020 27506004 -/+ buffers/cache: 3952356 61969912 Swap: 67050492 0 67050492 #------------------------------------- /home/global//freesurfer5.1//bin/trac-preproc #------------------------------------- #@# Image corrections Thu Dec 12 11:35:11 CET 2013 mri_convert /home/matthieu/NAS/matthieu/DTI_Alex/AR28/ar_30072013_1619380_11_1_dti32dirsenseV42.nii /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.nii.gz mri_convert /home/matthieu/NAS/matthieu/DTI_Alex/AR28/ar_30072013_1619380_11_1_dti32dirsenseV42.nii /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/matthieu/NAS/matthieu/DTI_Alex/AR28/ar_30072013_1619380_11_1_dti32dirsenseV42.nii... TR=12000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.nii.gz... cp /home/matthieu/NAS/matthieu/DTI_Alex/AR28/ar_30072013_1619380_11_1_dti32dirsenseV42.bvec /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.mghdti.bvecs cp /home/matthieu/NAS/matthieu/DTI_Alex/AR28/ar_30072013_1619380_11_1_dti32dirsenseV42.bval /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.mghdti.bvals flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -8 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.nii.gz x y z /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig_flip.nii.gz INFO: found /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig_flip.mghdti.bvecs /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvecs mv -f /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig_flip.mghdti.bvals /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvals eddy_correct /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_orig_flip.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz 0 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0000 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0001 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0002 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0003 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0004 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0005 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0006 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0007 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0008 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0009 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0010 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0011 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0012 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0013 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0014 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0015 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0016 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0017 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0018 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0019 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0020 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0021 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0022 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0023 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0024 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0025 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0026 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0027 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0028 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0029 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0030 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0031 processing /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_tmp0032 mv -f /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvecs /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvecs.norot xfmrot /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.ecclog /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvecs.norot /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvecs fslroi /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz 0 1 fslmaths /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -Tmean /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz bet /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb_brain_mask.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff #------------------------------------- #@# Intra-subject registration Thu Dec 12 11:42:34 CET 2013 mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brain.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brain.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brain.mgz... TR=7.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz... flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz tkregister2 --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz --targ /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2anat.mat --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2anatorig.dat tkregister_tcl /home/global//freesurfer5.1//tktools/tkregister2.tcl target volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz movable volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz reg file /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2anatorig.mat -inverse /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2anat.mat Log file is /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat.log Thu Dec 12 11:42:36 CET 2013 setenv SUBJECTS_DIR /home/fatmike/renaud/alexis/FS50_ju cd /home/matthieu/SVN/scripts/matthieu /home/global//freesurfer5.1//bin/bbregister --s AR28 --init-fsl --dti --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat --fslmat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ Linux toto 3.5.0-43-generic #66-Ubuntu SMP Wed Oct 23 12:01:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /home/global//freesurfer5.1/ mri_convert /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii mri_convert /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii... fslregister --s AR28 --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister --dof 6 Log file is /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat.fslregister.log Thu Dec 12 11:42:45 CET 2013 --s AR28 --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister --dof 6 $Id: fslregister,v 1.34.2.1 2011/03/28 20:35:36 greve Exp $ toto Linux toto 3.5.0-43-generic #66-Ubuntu SMP Wed Oct 23 12:01:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/matthieu/SVN/scripts/matthieu mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brainmask.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/refvol.fslregister.nii mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brainmask.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brainmask.mgz... TR=7.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/refvol.fslregister.nii... -------------------------------------- /home/matthieu/SVN/scripts/matthieu mri_convert /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii... Mov determinant is -8 /home/matthieu/SVN/scripts/matthieu tkregister2_cmdl --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/reg0.14586.dat --regheader --fslregout /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat.fsl.mat0 --s AR28 --noedit tkregister_tcl /home/global//freesurfer5.1//tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii reg file /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/reg0.14586.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -66.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 1.500; 0.000 0.000 1.000 -21.400; 0.000 -1.000 0.000 -10.150; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 1.500; 0.000 0.000 1.000 -21.400; 0.000 -1.000 0.000 -10.150; 0.000 0.000 0.000 1.000; Determinant 1 subject = AR28 RegMat --------------------------- 1.000 0.000 0.000 1.500; 0.000 0.000 1.000 -21.400; 0.000 -1.000 0.000 -10.150; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -8, ref det = -1 Thu Dec 12 11:42:50 CET 2013 /home/matthieu/SVN/scripts/matthieu flirt.fsl -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/refvol.fslregister.nii -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/fslmat0.trans.mat -schedule /home/global//fsl/etc/flirtsch/xyztrans.sch -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat.fsl.mat0 Thu Dec 12 11:42:57 CET 2013 /home/matthieu/SVN/scripts/matthieu flirt.fsl -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/refvol.fslregister.nii -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat.fsl.mat -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/fslregister/fslmat0.trans.mat -schedule /home/global//freesurfer5.1//bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s AR28 --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat --fslreg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat.fsl.mat --noedit tkregister_tcl /home/global//freesurfer5.1//tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 -0.001 0.000 1.209; 0.000 0.002 -1.000 174.594; 0.001 1.000 0.002 -11.292; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii reg file /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -66.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -8, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 -0.001 0.000 1.137; 0.000 0.002 1.000 -19.153; -0.001 -1.000 0.002 -11.141; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 -0.001 0.000 1.137; 0.000 0.002 1.000 -19.153; -0.001 -1.000 0.002 -11.141; 0.000 0.000 0.000 1.000; Determinant 1 subject = AR28 RegMat --------------------------- 1.000 -0.001 0.000 1.137; 0.000 0.002 1.000 -19.153; -0.001 -1.000 0.002 -11.141; 0.000 0.000 0.000 1.000; (standard_in) 1: illegal character: R (standard_in) 1: syntax error Started at Thu Dec 12 11:42:45 CET 2013 Ended at Thu Dec 12 11:43:16 CET 2013 fslregister Done To check results, run: tkregister2 --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat --surf orig mri_segreg --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --init-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat --out-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103 2011/03/02 00:04:24 nicks Exp $ setenv SUBJECTS_DIR /home/fatmike/renaud/alexis/FS50_ju cd /home/matthieu/SVN/scripts/matthieu mri_segreg --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --init-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat --out-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname toto machine x86_64 user matthieu movvol /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii regfile /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.init.dat subject AR28 dof 6 outregfile /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1387384590 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 -0.001 0.000 1.137; 0.000 0.002 1.000 -19.153; -0.001 -1.000 0.002 -11.141; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.010886 1 -25.0 -25.0 25.0 0.990953 2 -25.0 25.0 -25.0 1.024591 3 -25.0 25.0 25.0 1.007768 4 25.0 -25.0 -25.0 1.015766 5 25.0 -25.0 25.0 0.995678 6 25.0 25.0 -25.0 0.997349 7 25.0 25.0 25.0 1.041709 REL: 8 0.728233 8.084700 1.010588 rel = 0.720603 Initial costs ---------------- Number of surface hits 2622 WM Intensity 651.3678 +/- 193.3794 Ctx Intensity 712.7494 +/- 224.7503 Pct Contrast 7.7410 +/- 28.8847 Cost 0.7282 RelCost 0.7206 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9927 0.9927 0.0 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9646 0.9646 0.0 8 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.9489 0.9489 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.9147 0.9147 0.0 16 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.0000 0.8930 0.8930 0.0 24 -4.0000 -4.0000 -4.0000 4.0000 4.0000 -4.0000 0.8848 0.8848 0.0 42 -4.0000 -4.0000 0.0000 0.0000 4.0000 -4.0000 0.8616 0.8616 0.0 43 -4.0000 -4.0000 0.0000 0.0000 4.0000 0.0000 0.8461 0.8461 0.0 132 -4.0000 0.0000 0.0000 4.0000 4.0000 -4.0000 0.8318 0.8318 0.0 133 -4.0000 0.0000 0.0000 4.0000 4.0000 0.0000 0.8292 0.8292 0.0 256 0.0000 -4.0000 -4.0000 0.0000 0.0000 0.0000 0.8186 0.8186 0.0 259 0.0000 -4.0000 -4.0000 0.0000 4.0000 0.0000 0.8010 0.8010 0.0 282 0.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.7628 0.7628 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.5905 0.5905 0.0 373 0.0000 0.0000 0.0000 4.0000 0.0000 0.0000 0.4630 0.4630 0.0 Brute Force -------------------------- Min cost was 0.463010 Number of iterations 729 Search time 1.274000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 4.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 4 4 0 5 0 2 1.000 0.000 0.000 4.000 0.000 0.000 0.4575987890 7 0.836 0.000 0.000 4.000 0.000 0.000 0.4559992691 8 0.845 0.000 0.000 4.000 0.000 0.000 0.4559870467 11 0.846 0.000 0.000 4.000 0.000 0.000 0.4559863910 15 0.846 -1.618 0.000 4.000 0.000 0.000 0.4210515852 16 0.846 -1.068 0.000 4.000 0.000 0.000 0.4040786250 20 0.846 -0.971 0.000 4.000 0.000 0.000 0.4022155952 23 0.846 -0.989 0.000 4.000 0.000 0.000 0.4020710260 25 0.846 -1.000 0.000 4.000 0.000 0.000 0.4020699757 26 0.846 -0.994 0.000 4.000 0.000 0.000 0.4020598711 35 0.846 -0.994 -0.179 4.000 0.000 0.000 0.4012648547 36 0.846 -0.994 -0.145 4.000 0.000 0.000 0.4011644826 39 0.846 -0.994 -0.148 4.000 0.000 0.000 0.4011540499 44 0.846 -0.994 -0.148 2.382 0.000 0.000 0.3575673097 45 0.846 -0.994 -0.148 2.757 0.000 0.000 0.3362605075 48 0.846 -0.994 -0.148 2.938 0.000 0.000 0.3361196735 49 0.846 -0.994 -0.148 2.854 0.000 0.000 0.3352389865 51 0.846 -0.994 -0.148 2.867 0.000 0.000 0.3352034757 53 0.846 -0.994 -0.148 2.869 0.000 0.000 0.3352023111 54 0.846 -0.994 -0.148 2.870 0.000 0.000 0.3352021092 62 0.846 -0.994 -0.148 2.870 -0.294 0.000 0.3315941364 64 0.846 -0.994 -0.148 2.870 -0.418 0.000 0.3308575322 65 0.846 -0.994 -0.148 2.870 -0.371 0.000 0.3305582978 68 0.846 -0.994 -0.148 2.870 -0.361 0.000 0.3305238742 70 0.846 -0.994 -0.148 2.870 -0.360 0.000 0.3305230642 77 0.846 -0.994 -0.148 2.870 -0.360 0.382 0.3264992939 78 0.846 -0.994 -0.148 2.870 -0.360 0.328 0.3259278531 80 0.846 -0.994 -0.148 2.870 -0.360 0.314 0.3259270641 81 0.846 -0.994 -0.148 2.870 -0.360 0.320 0.3259209701 82 0.846 -0.994 -0.148 2.870 -0.360 0.321 0.3259209475 93 0.806 -0.994 -0.148 2.870 -0.360 0.321 0.3254081278 95 0.804 -0.994 -0.148 2.870 -0.360 0.321 0.3253993756 96 0.799 -0.994 -0.148 2.870 -0.360 0.321 0.3253853109 104 0.799 -1.613 -0.148 2.870 -0.360 0.321 0.3156494299 110 0.799 -1.599 -0.148 2.870 -0.360 0.321 0.3156264715 111 0.799 -1.600 -0.148 2.870 -0.360 0.321 0.3156259716 118 0.799 -1.600 0.234 2.870 -0.360 0.321 0.2977615097 120 0.799 -1.600 0.281 2.870 -0.360 0.321 0.2969092275 121 0.799 -1.600 0.310 2.870 -0.360 0.321 0.2962750905 122 0.799 -1.600 0.371 2.870 -0.360 0.321 0.2959747459 123 0.799 -1.600 0.354 2.870 -0.360 0.321 0.2958773353 133 0.799 -1.600 0.354 2.578 -0.360 0.321 0.2875454377 134 0.799 -1.600 0.354 2.579 -0.360 0.321 0.2875294299 135 0.799 -1.600 0.354 2.631 -0.360 0.321 0.2873731381 137 0.799 -1.600 0.354 2.611 -0.360 0.321 0.2872317669 138 0.799 -1.600 0.354 2.610 -0.360 0.321 0.2872306224 139 0.799 -1.600 0.354 2.609 -0.360 0.321 0.2872303283 147 0.799 -1.600 0.354 2.609 -0.509 0.321 0.2869742188 148 0.799 -1.600 0.354 2.609 -0.447 0.321 0.2866566930 150 0.799 -1.600 0.354 2.609 -0.460 0.321 0.2866459188 152 0.799 -1.600 0.354 2.609 -0.455 0.321 0.2866397742 154 0.799 -1.600 0.354 2.609 -0.456 0.321 0.2866397703 162 0.799 -1.600 0.354 2.609 -0.456 0.252 0.2852823828 164 0.799 -1.600 0.354 2.609 -0.456 0.198 0.2851322365 165 0.799 -1.600 0.354 2.609 -0.456 0.214 0.2851072957 166 0.799 -1.600 0.354 2.609 -0.456 0.213 0.2851072169 175 0.913 -1.600 0.354 2.609 -0.456 0.213 0.2822972433 186 0.913 -1.672 0.354 2.609 -0.456 0.213 0.2814053676 188 0.913 -1.669 0.354 2.609 -0.456 0.213 0.2814049602 197 0.913 -1.669 0.275 2.609 -0.456 0.213 0.2811329669 198 0.913 -1.669 0.300 2.609 -0.456 0.213 0.2805629941 199 0.913 -1.669 0.311 2.609 -0.456 0.213 0.2804873262 210 0.913 -1.669 0.311 2.566 -0.456 0.213 0.2800661565 211 0.913 -1.669 0.311 2.563 -0.456 0.213 0.2800577470 212 0.913 -1.669 0.311 2.557 -0.456 0.213 0.2800541093 213 0.913 -1.669 0.311 2.558 -0.456 0.213 0.2800535915 222 0.913 -1.669 0.311 2.558 -0.461 0.213 0.2799890215 223 0.913 -1.669 0.311 2.558 -0.482 0.213 0.2799146245 225 0.913 -1.669 0.311 2.558 -0.477 0.213 0.2799060464 234 0.913 -1.669 0.311 2.558 -0.477 0.233 0.2797694800 236 0.913 -1.669 0.311 2.558 -0.477 0.241 0.2797566561 246 0.930 -1.669 0.311 2.558 -0.477 0.240 0.2796231816 248 0.937 -1.669 0.311 2.558 -0.477 0.240 0.2796120690 259 0.937 -1.657 0.311 2.558 -0.477 0.240 0.2795765609 270 0.937 -1.657 0.320 2.558 -0.477 0.240 0.2795415462 271 0.937 -1.657 0.321 2.558 -0.477 0.240 0.2795411551 281 0.937 -1.657 0.321 2.570 -0.477 0.240 0.2794849409 282 0.937 -1.657 0.321 2.571 -0.477 0.240 0.2794840471 283 0.937 -1.657 0.321 2.572 -0.477 0.240 0.2794834012 294 0.937 -1.657 0.321 2.572 -0.482 0.240 0.2794425373 295 0.937 -1.657 0.321 2.572 -0.496 0.240 0.2793924679 296 0.937 -1.657 0.321 2.572 -0.499 0.240 0.2793910443 305 0.937 -1.657 0.321 2.572 -0.499 0.249 0.2793656490 306 0.937 -1.657 0.321 2.572 -0.499 0.258 0.2793537392 307 0.937 -1.657 0.321 2.572 -0.499 0.262 0.2793525483 308 0.937 -1.657 0.321 2.572 -0.499 0.261 0.2793525138 317 0.940 -1.657 0.321 2.572 -0.499 0.261 0.2793476267 319 0.942 -1.657 0.321 2.572 -0.499 0.261 0.2793471237 329 0.942 -1.655 0.321 2.572 -0.499 0.261 0.2793461288 331 0.942 -1.656 0.321 2.572 -0.499 0.261 0.2793460129 340 0.942 -1.656 0.315 2.572 -0.499 0.261 0.2793339288 351 0.942 -1.656 0.315 2.580 -0.499 0.261 0.2792917487 352 0.942 -1.656 0.315 2.583 -0.499 0.261 0.2792913278 354 0.942 -1.656 0.315 2.582 -0.499 0.261 0.2792907961 363 0.942 -1.656 0.315 2.582 -0.501 0.261 0.2792891944 364 0.942 -1.656 0.315 2.582 -0.502 0.261 0.2792884893 376 0.942 -1.656 0.315 2.582 -0.502 0.260 0.2792883481 378 0.946 -1.655 0.310 2.591 -0.505 0.258 0.2792761930 384 0.944 -1.655 0.312 2.588 -0.504 0.258 0.2792756237 385 0.945 -1.655 0.311 2.589 -0.505 0.258 0.2792748559 391 0.945 -1.655 0.311 2.589 -0.505 0.258 0.2792747399 401 0.944 -1.655 0.311 2.589 -0.505 0.258 0.2792665316 403 0.934 -1.655 0.311 2.589 -0.505 0.258 0.2792522987 404 0.937 -1.655 0.311 2.589 -0.505 0.258 0.2792490537 415 0.937 -1.656 0.311 2.589 -0.505 0.258 0.2792484008 416 0.937 -1.657 0.311 2.589 -0.505 0.258 0.2792483229 427 0.937 -1.657 0.308 2.589 -0.505 0.258 0.2792318729 428 0.937 -1.657 0.302 2.589 -0.505 0.258 0.2792312002 430 0.937 -1.657 0.305 2.589 -0.505 0.258 0.2792270347 439 0.937 -1.657 0.305 2.589 -0.505 0.250 0.2792237640 440 0.937 -1.657 0.305 2.589 -0.505 0.252 0.2792232649 441 0.937 -1.657 0.305 2.589 -0.505 0.253 0.2792232356 451 0.937 -1.657 0.305 2.589 -0.507 0.253 0.2792209659 455 0.941 -1.656 0.299 2.599 -0.510 0.251 0.2791993618 466 0.941 -1.656 0.299 2.599 -0.510 0.251 0.2791993560 481 0.940 -1.656 0.299 2.599 -0.510 0.251 0.2791982843 491 0.940 -1.655 0.299 2.599 -0.510 0.251 0.2791974587 502 0.940 -1.655 0.298 2.599 -0.510 0.251 0.2791959971 511 0.940 -1.655 0.298 2.599 -0.510 0.255 0.2791951662 512 0.940 -1.655 0.298 2.599 -0.510 0.254 0.2791949106 522 0.940 -1.655 0.298 2.599 -0.511 0.254 0.2791937330 533 0.940 -1.655 0.298 2.599 -0.512 0.254 0.2791937305 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 0.991173 1 -25.0 -25.0 25.0 1.009175 2 -25.0 25.0 -25.0 1.022154 3 -25.0 25.0 25.0 0.996371 4 25.0 -25.0 -25.0 1.022118 5 25.0 -25.0 25.0 1.025847 6 25.0 25.0 -25.0 1.021723 7 25.0 25.0 25.0 1.030182 REL: 8 0.279194 8.118742 1.014843 rel = 0.27511 Number of iterations 6 Min cost was 0.279194 Number of FunctionCalls 539 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.931000 sec Parameters at optimum (transmm) 0.93995 -1.65473 0.29763 Parameters at optimum (rotdeg) 2.59920 -0.51153 0.25416 Final costs ---------------- Number of surface hits 2622 WM Intensity 593.8719 +/- 163.7920 Ctx Intensity 716.0560 +/- 185.5534 Pct Contrast 18.1167 +/- 22.3983 Cost 0.2792 RelCost 0.7206 Reg at min cost was 1.000 0.008 -0.005 2.266; 0.004 0.047 0.999 -20.277; 0.008 -0.999 0.047 -11.689; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat, type = 14 Original Reg 1.000 -0.001 0.000 1.137; 0.000 0.002 1.000 -19.153; -0.001 -1.000 0.002 -11.141; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.009 0.005 -1.130; -0.004 -0.045 0.001 1.124; -0.009 -0.001 -0.045 0.549; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 3.043187 Computing change in rh position Surface RMS Diff (mm) 2.954736 5.613587 mri_segreg done mri_segreg --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --init-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat --out-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103 2011/03/02 00:04:24 nicks Exp $ setenv SUBJECTS_DIR /home/fatmike/renaud/alexis/FS50_ju cd /home/matthieu/SVN/scripts/matthieu mri_segreg --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii --init-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat --out-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname toto machine x86_64 user matthieu movvol /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/template.nii regfile /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/tmp.bbregister.14549/bbr.pass1.dat subject AR28 dof 6 outregfile /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1387673465 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.008 -0.005 2.266; 0.004 0.047 0.999 -20.277; 0.008 -0.999 0.047 -11.689; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 0.986531 1 -25.0 -25.0 25.0 1.017638 2 -25.0 25.0 -25.0 1.020915 3 -25.0 25.0 25.0 0.986770 4 25.0 -25.0 -25.0 1.002641 5 25.0 -25.0 25.0 1.011949 6 25.0 25.0 -25.0 1.009063 7 25.0 25.0 25.0 1.015882 REL: 8 0.288789 8.051390 1.006424 rel = 0.286946 Initial costs ---------------- Number of surface hits 262493 WM Intensity 594.0055 +/- 163.7498 Ctx Intensity 716.6562 +/- 191.1961 Pct Contrast 18.2099 +/- 22.2454 Cost 0.2888 RelCost 0.2869 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.2905 0.2905 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.2881 0.2881 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.2881 0.2881 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.2874 0.2874 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.2874 0.2874 0.0 30 -0.1000 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.2851 0.2851 0.0 33 -0.1000 -0.1000 0.0000 -0.1000 0.1000 -0.1000 0.2838 0.2838 0.0 60 -0.1000 -0.1000 0.1000 -0.1000 0.1000 -0.1000 0.2830 0.2830 0.0 273 0.0000 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.2819 0.2819 0.0 301 0.0000 -0.1000 0.1000 -0.1000 0.0000 0.0000 0.2817 0.2817 0.0 358 0.0000 0.0000 0.0000 -0.1000 0.1000 0.0000 0.2814 0.2814 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.2806 0.2806 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2792 0.2792 0.0 Brute Force -------------------------- Min cost was 0.279194 Number of iterations 729 Search time 1.274000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.022 0.000 0.000 0.000 0.000 0.000 0.2887124244 8 -0.033 0.000 0.000 0.000 0.000 0.000 0.2887056956 9 -0.032 0.000 0.000 0.000 0.000 0.000 0.2887056366 17 -0.032 0.011 0.000 0.000 0.000 0.000 0.2886609745 18 -0.032 0.030 0.000 0.000 0.000 0.000 0.2886366843 19 -0.032 0.027 0.000 0.000 0.000 0.000 0.2886365362 21 -0.032 0.028 0.000 0.000 0.000 0.000 0.2886364713 29 -0.032 0.028 -0.001 0.000 0.000 0.000 0.2886362521 30 -0.032 0.028 -0.002 0.000 0.000 0.000 0.2886361632 39 -0.032 0.028 -0.002 -0.228 0.000 0.000 0.2856209214 40 -0.032 0.028 -0.002 -0.223 0.000 0.000 0.2856111049 41 -0.032 0.028 -0.002 -0.210 0.000 0.000 0.2855976800 44 -0.032 0.028 -0.002 -0.209 0.000 0.000 0.2855976168 51 -0.032 0.028 -0.002 -0.209 -0.046 0.000 0.2855447949 52 -0.032 0.028 -0.002 -0.209 -0.031 0.000 0.2855360773 61 -0.032 0.028 -0.002 -0.209 -0.031 0.114 0.2848537428 63 -0.032 0.028 -0.002 -0.209 -0.031 0.112 0.2848535001 73 0.008 0.028 -0.002 -0.209 -0.031 0.111 0.2848113423 74 -0.005 0.028 -0.002 -0.209 -0.031 0.111 0.2847966913 83 -0.005 -0.080 -0.002 -0.209 -0.031 0.111 0.2839819809 84 -0.005 -0.074 -0.002 -0.209 -0.031 0.111 0.2839790393 93 -0.005 -0.074 0.008 -0.209 -0.031 0.111 0.2839593260 94 -0.005 -0.074 0.021 -0.209 -0.031 0.111 0.2839480474 95 -0.005 -0.074 0.022 -0.209 -0.031 0.111 0.2839476219 98 -0.005 -0.074 0.026 -0.209 -0.031 0.111 0.2839469613 107 -0.005 -0.074 0.026 -0.300 -0.031 0.111 0.2836139367 108 -0.005 -0.074 0.026 -0.282 -0.031 0.111 0.2835863407 109 -0.005 -0.074 0.026 -0.280 -0.031 0.111 0.2835856188 118 -0.005 -0.074 0.026 -0.280 -0.077 0.111 0.2833662119 119 -0.005 -0.074 0.026 -0.280 -0.095 0.111 0.2833649420 120 -0.005 -0.074 0.026 -0.280 -0.087 0.111 0.2833603928 122 -0.005 -0.074 0.026 -0.280 -0.086 0.111 0.2833603920 132 -0.005 -0.074 0.026 -0.280 -0.086 0.107 0.2833591943 133 -0.005 -0.074 0.026 -0.280 -0.086 0.104 0.2833587014 135 -0.005 -0.074 0.026 -0.280 -0.086 0.101 0.2833585653 136 -0.005 -0.074 0.026 -0.280 -0.086 0.102 0.2833584661 138 0.022 -0.176 0.054 -0.351 -0.140 0.093 0.2828947814 145 0.019 -0.165 0.051 -0.344 -0.134 0.094 0.2828923333 146 0.020 -0.169 0.052 -0.346 -0.136 0.094 0.2828916424 149 0.021 -0.169 0.052 -0.347 -0.136 0.093 0.2828915243 161 0.051 -0.169 0.052 -0.347 -0.136 0.093 0.2827924073 162 0.056 -0.169 0.052 -0.347 -0.136 0.093 0.2827914832 163 0.054 -0.169 0.052 -0.347 -0.136 0.093 0.2827912514 171 0.054 -0.169 0.052 -0.347 -0.136 0.134 0.2827594629 172 0.054 -0.169 0.052 -0.347 -0.136 0.123 0.2827541910 183 0.054 -0.169 0.054 -0.347 -0.136 0.123 0.2827536197 192 0.054 -0.169 0.055 -0.362 -0.136 0.123 0.2827407625 193 0.054 -0.169 0.055 -0.361 -0.136 0.123 0.2827401911 202 0.054 -0.169 0.055 -0.361 -0.134 0.123 0.2827386083 203 0.054 -0.169 0.055 -0.361 -0.131 0.123 0.2827370043 214 0.055 -0.173 0.056 -0.363 -0.133 0.123 0.2827357917 215 0.055 -0.173 0.056 -0.363 -0.133 0.123 0.2827357859 225 0.061 -0.173 0.056 -0.363 -0.133 0.123 0.2827339453 227 0.060 -0.173 0.056 -0.363 -0.133 0.123 0.2827337491 236 0.060 -0.173 0.056 -0.363 -0.133 0.125 0.2827336071 237 0.060 -0.173 0.056 -0.363 -0.133 0.126 0.2827335840 247 0.060 -0.173 0.065 -0.363 -0.133 0.126 0.2827331369 248 0.060 -0.173 0.061 -0.363 -0.133 0.126 0.2827319784 249 0.060 -0.173 0.062 -0.363 -0.133 0.126 0.2827319758 257 0.060 -0.173 0.062 -0.367 -0.133 0.126 0.2827316405 258 0.060 -0.173 0.062 -0.366 -0.133 0.126 0.2827313236 337 0.059 -0.171 0.061 -0.365 -0.132 0.126 0.2827313032 338 0.059 -0.172 0.062 -0.365 -0.132 0.126 0.2827312049 341 0.059 -0.172 0.062 -0.365 -0.132 0.126 0.2827311834 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 0.987901 1 -25.0 -25.0 25.0 1.018606 2 -25.0 25.0 -25.0 1.023200 3 -25.0 25.0 25.0 0.989230 4 25.0 -25.0 -25.0 1.002375 5 25.0 -25.0 25.0 1.010402 6 25.0 25.0 -25.0 1.010375 7 25.0 25.0 25.0 1.012853 REL: 8 0.282731 8.054942 1.006868 rel = 0.280803 Number of iterations 5 Min cost was 0.282731 Number of FunctionCalls 403 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 29.972000 sec Parameters at optimum (transmm) 0.05936 -0.17195 0.06158 Parameters at optimum (rotdeg) -0.36515 -0.13216 0.12618 Final costs ---------------- Number of surface hits 262493 WM Intensity 592.6701 +/- 162.6472 Ctx Intensity 716.1330 +/- 191.8674 Pct Contrast 18.3488 +/- 22.0986 Cost 0.2827 RelCost 0.2869 Reg at min cost was 1.000 0.010 -0.007 2.397; 0.007 0.041 0.999 -20.518; 0.011 -0.999 0.041 -11.493; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.008 -0.005 2.266; 0.004 0.047 0.999 -20.277; 0.008 -0.999 0.047 -11.689; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.002 0.002 -0.131; -0.002 0.006 -0.000 0.241; -0.002 0.000 0.006 -0.196; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.314751 Computing change in rh position Surface RMS Diff (mm) 0.310024 0.709318 mri_segreg done tkregister2_cmdl --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /home/global//freesurfer5.1//tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz reg file /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.010 -0.007 2.397; 0.007 0.041 0.999 -20.518; 0.011 -0.999 0.041 -11.493; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -66.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.010 -0.007 2.397; 0.007 0.041 0.999 -20.518; 0.011 -0.999 0.041 -11.493; 0.000 0.000 0.000 1.000; Determinant 1 subject = AR28 RegMat --------------------------- 1.000 0.010 -0.007 2.397; 0.007 0.041 0.999 -20.518; 0.011 -0.999 0.041 -11.493; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -8, ref det = -1 Cleaning up Started at Thu Dec 12 11:42:36 CET 2013 Ended at Thu Dec 12 11:44:04 CET 2013 BBR-Run-Time-Sec 88 bbregister Done To check results, run: tkregister2 --mov /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz --reg /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.mat -inverse /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -concat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2anatorig.mat convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2anat.bbr.mat -inverse /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Thu Dec 12 11:44:04 CET 2013 flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_mni.nii.gz -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2anat.mat -inverse /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat -concat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat -inverse /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2mni.mat -concat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2anatorig.mat -inverse /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Thu Dec 12 11:45:33 CET 2013 mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/matthieu/SVN/scripts/matthieu cmdline mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname toto machine x86_64 user matthieu input /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 478756 values in range Counting number of voxels Found 478756 voxels in final mask mri_binarize done mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/matthieu/SVN/scripts/matthieu cmdline mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname toto machine x86_64 user matthieu input /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 509465 values in range Counting number of voxels Found 509465 voxels in final mask mri_binarize done mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/matthieu/SVN/scripts/matthieu cmdline mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname toto machine x86_64 user matthieu input /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 7953 values in range Counting number of voxels Found 7953 voxels in final mask mri_binarize done mri_aparc2aseg --s AR28 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/fatmike/renaud/alexis/FS50_ju subject AR28 outvol /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/fatmike/renaud/alexis/FS50_ju/AR28/surf/lh.white Reading lh pial surface /home/fatmike/renaud/alexis/FS50_ju/AR28/surf/lh.pial Loading lh annotations from /home/fatmike/renaud/alexis/FS50_ju/AR28/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/fatmike/renaud/alexis/FS50_ju/AR28/surf/rh.white Reading rh pial surface /home/fatmike/renaud/alexis/FS50_ju/AR28/surf/rh.pial Loading rh annotations from /home/fatmike/renaud/alexis/FS50_ju/AR28/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/ribbon.mgz Loading filled from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 932194 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 4 clusters 0 k 7.000000 1 k 1.000000 2 k 904.000000 3 k 1.000000 Fixing Parahip RH WM Found 1 clusters 0 k 875.000000 Writing output aseg to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/matthieu/SVN/scripts/matthieu cmdline mri_binarize --i /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex.nii.gz sysname Linux hostname toto machine x86_64 user matthieu input /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 486349 values in range Counting number of voxels Found 486349 voxels in final mask mri_binarize done mri_binarize --i /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/matthieu/SVN/scripts/matthieu cmdline mri_binarize --i /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname toto machine x86_64 user matthieu input /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 757984 values in range Counting number of voxels Found 757984 voxels in final mask mri_binarize done mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 16 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/matthieu/SVN/scripts/matthieu cmdline mri_binarize --i /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz --match 16 --o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname toto machine x86_64 user matthieu input /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 21984 values in range Counting number of voxels Found 21984 voxels in final mask mri_binarize done fslmaths /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm.nii.gz -add /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/Brain-Stem.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brainmask.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brainmask.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/brainmask.mgz... TR=7.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/notventricles.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from /home/fatmike/renaud/alexis/FS50_ju/AR28/mri/aparc+aseg.mgz... TR=7.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter++.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter++.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter++.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/White-Matter++.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/notventricles.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/notventricles.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/notventricles.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/notventricles.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/notventricles.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/cortex.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm+bs.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/cortex+2mm+bs.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg_mask.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/aparc+aseg_mask.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/lowb.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz -k /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi_snr.txt flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -ref /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/brain_anat_orig.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour #------------------------------------- #@# Tensor fit Thu Dec 12 11:49:35 CET 2013 dtifit -k /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz -m /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvecs -b /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/bvals -o /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit 0 128 0 128 0 66 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_FA.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_L1.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_L2.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_L3.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_MD.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_MO.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat flirt -in /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dtifit_S0.nii.gz -ref /home/global//fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Thu Dec 12 11:49:54 CET 2013 /home/global//freesurfer5.1//bin/dmri_train --outdir /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.AR28.12002.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --debug cwd /home/matthieu/SVN/scripts/matthieu cmdline /home/global//freesurfer5.1//bin/dmri_train --outdir /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.AR28.12002.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --debug sysname Linux hostname toto machine x86_64 user matthieu Output directory: /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.AR28.12002.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/notorious/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_FA.bbr.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 0 Loading brain mask of output subject from /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/notorious/NAS/matthieu/DTI_Alex/AR28/dmri/mni/dtifit_FA.bbr.nii.gz Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 566 streamlines for straying off mask INFO: Rejected 102 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 7738 total streamlines (min/mean/max length: 60/99/149) Loading segmentation from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4473 non-truncated streamlines (min/mean/max length: 60/99/149) INFO: Center of mass of start points: (97+/-3, 98+/-6, 39+/-13) INFO: Center of mass of midpoints: (111+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 39501 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 101 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 96 99 30 102 107 56 113 111 79 114 107 114 109 109 136 INFO: Distances between consecutive points are 28 26 35 23 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 13.304 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 526 streamlines for straying off mask INFO: Rejected 90 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8650 total streamlines (min/mean/max length: 57/99/141) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5251 non-truncated streamlines (min/mean/max length: 57/98/141) INFO: Center of mass of start points: (82+/-3, 97+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-8) INFO: Center of mass of end points: (68+/-7, 105+/-10, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 45714 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 114 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 84 91 29 75 107 64 65 111 84 68 102 136 68 104 146 INFO: Distances between consecutive points are 40 23 53 10 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 17.627 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 25 streamlines for straying off mask INFO: Rejected 30 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3531 total streamlines (min/mean/max length: 53/91/142) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1386 non-truncated streamlines (min/mean/max length: 58/98/142) INFO: Center of mass of start points: (133+/-8, 137+/-5, 41+/-9) INFO: Center of mass of midpoints: (132+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 70+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38535 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 129 133 34 131 125 47 134 97 61 117 50 71 105 35 59 INFO: Distances between consecutive points are 15 31 51 23 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 11.416 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 72 streamlines for straying off mask INFO: Rejected 11 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2076 total streamlines (min/mean/max length: 52/92/134) Processing pathway 4 of 18... Matching streamline ends INFO: Have 925 non-truncated streamlines (min/mean/max length: 58/100/129) INFO: Center of mass of start points: (46+/-8, 140+/-6, 42+/-10) INFO: Center of mass of midpoints: (47+/-4, 106+/-2, 58+/-4) INFO: Center of mass of end points: (66+/-12, 46+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28230 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 42 137 39 48 114 54 48 89 64 68 53 75 70 42 62 INFO: Distances between consecutive points are 28 27 43 17 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 10.131 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 80 streamlines for straying off mask INFO: Rejected 26 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5188 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3636 non-truncated streamlines (min/mean/max length: 9/57/104) INFO: Center of mass of start points: (128+/-7, 145+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23185 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 124 144 40 128 128 46 125 127 58 109 151 61 107 168 58 INFO: Distances between consecutive points are 18 12 29 17 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 7.248 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 241 streamlines for straying off mask INFO: Rejected 126 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6554 total streamlines (min/mean/max length: 9/62/105) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4573 non-truncated streamlines (min/mean/max length: 14/61/103) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-5) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-17, 57+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 25741 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 49 149 44 52 129 47 58 131 58 72 152 61 76 176 55 INFO: Distances between consecutive points are 20 13 25 25 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 9.153 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 2096 streamlines for straying off mask INFO: Rejected 194 streamlines for reversing direction INFO: Rejected 152 streamlines as length outliers INFO: Have 7333 total streamlines (min/mean/max length: 86/131/159) Processing pathway 7 of 18... Matching streamline ends INFO: Have 5407 non-truncated streamlines (min/mean/max length: 86/133/162) INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 100+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 61728 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 38 108 117 58 86 92 91 84 61 64 86 72 38 112 INFO: Distances between consecutive points are 35 41 41 38 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 114 63 85 89 91 84 61 63 87 72 40 111 INFO: Distances between consecutive points are 34 38 40 35 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 43 107 112 66 86 86 92 84 63 60 87 77 39 111 INFO: Distances between consecutive points are 34 37 40 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 36 111 116 58 87 93 90 82 60 67 92 77 41 103 INFO: Distances between consecutive points are 38 40 41 33 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 35 100 114 62 84 89 91 84 62 64 87 72 39 112 INFO: Distances between consecutive points are 35 38 38 37 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 100 114 63 84 85 90 85 61 59 86 72 39 115 INFO: Distances between consecutive points are 32 40 39 37 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 36 104 116 61 86 94 91 86 63 67 89 77 38 104 INFO: Distances between consecutive points are 34 37 39 36 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 38 93 113 69 87 84 90 85 61 59 86 72 38 112 INFO: Distances between consecutive points are 33 36 39 35 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 37 105 117 62 89 91 91 83 60 67 92 77 41 103 INFO: Distances between consecutive points are 35 39 40 33 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 35 99 117 62 86 91 92 85 60 66 86 69 38 106 INFO: Distances between consecutive points are 33 40 40 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 104 117 62 88 91 91 83 59 66 92 79 42 103 INFO: Distances between consecutive points are 36 39 42 33 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 107 114 61 87 89 92 84 62 64 90 70 36 100 INFO: Distances between consecutive points are 33 40 39 31 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 41 106 113 65 87 86 92 84 62 62 89 70 36 100 INFO: Distances between consecutive points are 35 38 39 29 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 102 114 59 85 94 90 85 63 66 89 76 39 110 INFO: Distances between consecutive points are 33 37 39 37 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 42 107 114 61 86 89 92 84 62 64 90 70 36 100 INFO: Distances between consecutive points are 34 40 39 31 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 93 113 68 87 86 91 84 60 61 86 72 38 112 INFO: Distances between consecutive points are 31 36 40 37 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 35 99 117 60 86 92 92 84 60 67 87 70 39 106 INFO: Distances between consecutive points are 31 41 41 35 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 96 36 111 115 57 86 94 90 82 61 70 92 77 41 103 INFO: Distances between consecutive points are 38 39 40 35 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 44 105 111 68 85 83 91 83 64 59 85 80 42 111 INFO: Distances between consecutive points are 33 36 37 35 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 44 105 111 68 85 81 90 84 65 57 84 78 39 112 INFO: Distances between consecutive points are 33 37 37 36 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 38 92 112 68 84 83 90 84 62 58 86 73 38 112 INFO: Distances between consecutive points are 32 36 38 35 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 100 39 105 115 63 87 87 90 85 66 59 89 75 40 114 INFO: Distances between consecutive points are 34 39 38 33 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 38 105 116 61 86 93 91 87 62 66 90 78 42 109 INFO: Distances between consecutive points are 33 38 40 35 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 44 105 111 68 85 82 90 84 64 59 85 79 40 111 INFO: Distances between consecutive points are 34 36 36 36 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 107 119 63 89 93 90 84 62 69 88 71 37 97 INFO: Distances between consecutive points are 31 38 38 34 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 43 107 118 61 88 94 89 84 62 70 88 71 37 97 INFO: Distances between consecutive points are 29 37 37 35 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 68 87 88 88 83 61 67 85 75 37 105 INFO: Distances between consecutive points are 34 36 34 39 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 39 92 111 70 84 83 89 85 61 60 86 72 39 112 INFO: Distances between consecutive points are 33 34 36 35 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 112 69 84 83 89 84 62 58 86 72 40 111 INFO: Distances between consecutive points are 33 35 37 32 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 105 39 106 120 64 87 90 90 84 59 69 85 71 35 102 INFO: Distances between consecutive points are 35 40 37 40 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 88 90 84 59 66 85 71 35 102 INFO: Distances between consecutive points are 33 40 38 37 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 40 103 113 62 82 89 90 84 62 61 87 73 43 113 INFO: Distances between consecutive points are 33 37 40 33 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 107 38 103 119 61 86 93 87 83 64 73 85 74 39 100 INFO: Distances between consecutive points are 31 37 32 38 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 68 85 71 35 102 INFO: Distances between consecutive points are 33 39 37 39 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 100 118 67 88 89 87 83 61 67 85 75 37 105 INFO: Distances between consecutive points are 32 36 34 39 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 99 114 61 81 88 91 83 62 61 86 74 40 112 INFO: Distances between consecutive points are 36 40 40 36 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 36 101 117 62 86 93 91 86 62 68 90 78 41 108 INFO: Distances between consecutive points are 34 38 39 36 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 107 113 58 83 91 89 83 61 63 88 73 43 113 INFO: Distances between consecutive points are 34 38 40 34 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 40 103 114 60 82 92 90 83 62 65 88 73 43 113 INFO: Distances between consecutive points are 33 37 39 35 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 97 35 98 116 61 89 92 91 84 63 71 85 80 42 108 INFO: Distances between consecutive points are 33 39 35 41 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 37 94 114 67 87 88 92 85 59 63 86 69 40 107 INFO: Distances between consecutive points are 32 36 41 33 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 126 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 41 100 118 67 87 89 87 83 61 67 85 75 37 105 INFO: Distances between consecutive points are 32 35 34 39 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 107 113 58 83 90 90 83 61 63 87 72 43 113 INFO: Distances between consecutive points are 34 39 40 35 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 37 101 117 63 87 93 91 86 63 66 90 79 42 108 INFO: Distances between consecutive points are 34 37 39 34 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 120 66 87 89 90 84 59 67 86 71 37 102 INFO: Distances between consecutive points are 33 39 38 36 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 37 100 117 62 89 92 89 85 64 73 87 73 42 99 INFO: Distances between consecutive points are 31 37 32 34 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 119 68 88 87 90 84 59 65 85 71 36 102 INFO: Distances between consecutive points are 34 39 38 36 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 36 99 114 61 83 91 90 84 61 63 87 72 43 113 INFO: Distances between consecutive points are 34 37 40 35 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 37 100 118 63 89 92 89 85 64 72 88 69 37 101 INFO: Distances between consecutive points are 32 37 33 38 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 119 67 87 88 90 84 59 67 86 71 36 102 INFO: Distances between consecutive points are 34 39 37 37 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 104 41 100 117 55 86 99 86 83 63 71 86 74 39 100 INFO: Distances between consecutive points are 24 36 39 37 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 846.86 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 912 streamlines for straying off mask INFO: Rejected 395 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 26286 total streamlines (min/mean/max length: 51/91/119) Processing pathway 8 of 18... Matching streamline ends INFO: Have 19003 non-truncated streamlines (min/mean/max length: 51/91/120) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-11) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 65767 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 105 193 75 107 164 73 89 151 75 71 167 70 79 191 82 INFO: Distances between consecutive points are 29 22 25 28 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 47.43 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 88 streamlines for straying off mask INFO: Rejected 7 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 13445 total streamlines (min/mean/max length: 30/61/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 5102 non-truncated streamlines (min/mean/max length: 35/69/89) INFO: Center of mass of start points: (115+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 43033 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 107 186 78 113 170 75 111 157 75 107 137 78 98 116 78 INFO: Distances between consecutive points are 17 13 21 23 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 10.797 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 80 streamlines for straying off mask INFO: Rejected 21 streamlines for reversing direction INFO: Rejected 66 streamlines as length outliers INFO: Have 11845 total streamlines (min/mean/max length: 32/64/91) Processing pathway 10 of 18... Matching streamline ends INFO: Have 5055 non-truncated streamlines (min/mean/max length: 37/71/92) INFO: Center of mass of start points: (67+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 38773 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 70 192 84 68 159 77 70 139 83 78 123 78 81 111 76 INFO: Distances between consecutive points are 34 21 19 13 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 9.788 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 295 streamlines for straying off mask INFO: Rejected 60 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3906 total streamlines (min/mean/max length: 3/45/95) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1141 non-truncated streamlines (min/mean/max length: 20/52/85) INFO: Center of mass of start points: (110+/-6, 83+/-12, 74+/-12) INFO: Center of mass of midpoints: (111+/-2, 99+/-5, 58+/-5) INFO: Center of mass of end points: (116+/-5, 121+/-15, 42+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 16549 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 108 79 74 107 87 69 114 108 48 118 124 42 118 135 38 INFO: Distances between consecutive points are 9 31 18 12 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 4.998 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 28 streamlines for straying off mask INFO: Rejected 53 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 4139 total streamlines (min/mean/max length: 12/44/90) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1216 non-truncated streamlines (min/mean/max length: 23/54/92) INFO: Center of mass of start points: (71+/-5, 80+/-6, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-3) INFO: Center of mass of end points: (63+/-4, 126+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 17283 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 74 76 83 67 100 56 66 114 41 66 118 40 66 130 38 INFO: Distances between consecutive points are 37 21 4 12 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 4.778 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 48 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5229 total streamlines (min/mean/max length: 25/68/133) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1533 non-truncated streamlines (min/mean/max length: 54/86/133) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 85+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19987 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 74 96 101 82 101 96 107 105 97 136 101 97 163 78 INFO: Distances between consecutive points are 9 26 29 35 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 8.924 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 50 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 37 streamlines as length outliers INFO: Have 4327 total streamlines (min/mean/max length: 28/65/116) Processing pathway 14 of 18... Matching streamline ends INFO: Have 958 non-truncated streamlines (min/mean/max length: 53/83/118) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 105+/-2) INFO: Center of mass of end points: (83+/-4, 160+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18993 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 78 78 101 80 91 104 83 124 106 81 152 95 79 164 92 INFO: Distances between consecutive points are 13 33 30 13 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 7.525 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 244 streamlines for straying off mask INFO: Rejected 631 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 9357 total streamlines (min/mean/max length: 21/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3805 non-truncated streamlines (min/mean/max length: 27/65/102) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-12) INFO: Center of mass of midpoints: (127+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50197 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 150 131 96 134 120 97 128 97 103 128 88 102 150 86 113 INFO: Distances between consecutive points are 19 25 9 25 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 8.45 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 211 streamlines for straying off mask INFO: Rejected 408 streamlines for reversing direction INFO: Rejected 112 streamlines as length outliers INFO: Have 14891 total streamlines (min/mean/max length: 19/64/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6706 non-truncated streamlines (min/mean/max length: 27/69/102) INFO: Center of mass of start points: (34+/-8, 130+/-6, 98+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 81+/-10, 113+/-11) INFO: Split streamlines into 16 segments Computing path histograms INFO: Total streamline volume is 65937 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 35 134 99 52 115 101 51 107 103 53 79 102 43 78 123 INFO: Distances between consecutive points are 26 8 28 23 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 12.748 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 447 streamlines for straying off mask INFO: Rejected 45 streamlines for reversing direction INFO: Rejected 49 streamlines as length outliers INFO: Have 7353 total streamlines (min/mean/max length: 33/90/135) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4514 non-truncated streamlines (min/mean/max length: 37/92/135) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 85+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45855 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 147 131 84 129 117 98 125 88 98 130 78 78 142 93 60 INFO: Distances between consecutive points are 27 29 23 26 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 9.977 sec. Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /home/global//freesurfer5.1//trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 24 streamlines for straying off mask INFO: Rejected 14 streamlines for reversing direction INFO: Rejected 37 streamlines as length outliers INFO: Have 3067 total streamlines (min/mean/max length: 54/90/136) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1639 non-truncated streamlines (min/mean/max length: 55/92/137) INFO: Center of mass of start points: (40+/-9, 135+/-8, 97+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-10, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 32298 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 100 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 32 137 82 55 123 97 54 90 99 43 81 76 27 83 70 INFO: Distances between consecutive points are 31 33 27 17 Writing output files to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/notorious/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 9.467 sec. dmri_train done img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt img2imgcoord -src /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/lowb_brain_mask.bbr.nii.gz -dest /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/lowb_brain_mask.nii.gz -xfm /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/xfms/mni2diff.bbr.mat /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt | sed -n "2,6 p" > /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt #------------------------------------- trac-preproc finished without error at Thu Dec 12 12:11:43 CET 2013 New invocation of trac-all Thu Dec 12 12:19:56 CET 2013 /home/matthieu/SVN/scripts/matthieu /home/global//freesurfer5.1//bin/trac-all -bedp -c /home/matthieu/NAS/matthieu/DTI_Alex/dmrirc.tutorial Subject AR28 SUBJECTS_DIR /home/fatmike/renaud/alexis/FS50_ju FREESURFER_HOME /home/global//freesurfer5.1/ Actual FREESURFER_HOME /home/global/freesurfer5.1 build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 matthieu toto Linux toto 3.5.0-43-generic #66-Ubuntu SMP Wed Oct 23 12:01:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 513269 maxlocks unlimited maxsignal 513269 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 65922268 32175644 33746624 0 328564 27800812 -/+ buffers/cache: 4046268 61876000 Swap: 67050492 0 67050492 ######################################## Program versions: $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-11:19:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 5.5 $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $ $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-11:19:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-11:19:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-11:19:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/12/12-11:19:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: matthieu Machine: toto Platform: Linux PlatformVersion: 3.5.0-43-generic CompilerName: GCC CompilerVersion: 30400 ln -sf /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dlabel/diff/anat_brain_mask.bbr.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/nodif_brain_mask.nii.gz ln -sf /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/dwi.nii.gz /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data.nii.gz WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri subjectdir is /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri Making bedpostx directory structure Queuing preprocessing stages /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 263: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx_pre: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x: unexpected operator Queuing parallel processing stage /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x66: unexpected operator Queuing post processing stage /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 263: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx_post: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x: unexpected operator Type /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri.bedpostX/monitor to show progress. Type /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri.bedpostX/cancel to terminate all the queued tasks. You will get an email at the end of the post-processing stage.