Hi Harriet

Is that a parcellation overlaid on the brain? Usually this means something was not regenerated when you reran (like the parcellation). Try just recreating it an see if it fixes your problems. Should just take a couple of min to run just the parcellation stage

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Harriet Cornwell
Sent: Friday, June 18, 2021 9:54 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] External 3D View Issue

External Email - Use Caution

Hello,

We thought we had finished manually editing a T1 scan and so opened it in the external 3D view to perform final checks and it looks incredibly messy (see attached screenshot). Are you able to advise whether this is an issue? If so, is it possible to fix it and, if it can be fixed, how we should go about doing so? Also, do you have any idea what might have caused this to happen?

Thank you in advance!

Harriet Cornwell