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Hi FreeSurfer developers,
I want to transform a label file in Gifti-format from the fsaverage space into the native space of a subject (CON01a).
The FreeSurfer reconstruction pipeline was completely executed before for this subject.
The label file lh.JulichBrainAtlas_3.0.3.label.gii is in freeview correctly visualized on the surface of fsaverage.
But when I call mri_label2label as below, it seems that the Gifti-format is not recognized:
mri_label2label --srcsubject fsaverage --srclabel ../atlas/lh.JulichBrainAtlas_3.0.3.label.gii
--trgsubject CON01a --trglabel CON01a/label/lh.JulichBrainAtlas_3.0.3.label.gii
--hemi lh --trgsurf white --regmethod surface
Output:
srclabel = ../atlas/lh.JulichBrainAtlas_3.0.3.label.gii
srcsubject = fsaverage
trgsubject = CON01a
trglabel = CON01a/label/lh.JulichBrainAtlas_3.0.3.label.gii
regmethod = surface
srchemi = lh
trghemi = lh
trgsurface = white
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
usehash = 1
Use ProjAbs = 0, 0
Use ProjFrac = 0, 0
DoPaint 0
Loading source label.
<!DOCTYPE GIFTI SYSTEM "MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://gifti.projects.nitrc.org/gifti.dtd">
error: mri_label2label: could not scan # of lines from label file
The Gifti-file contains a LabelTable (including a RGB-color for each
label), and a DataArray of Labels (for each vertex), but not the vertex
coordinates.
Please, could you tell me how I can transform this file into the native space of each subject?
I have attached the compressed label file to this mail.
Best regards,
Peter