/Hello everyone,/
/We have been utilizing freesurfer for our brain morphometry and processing
pipelines, and have recently tested the samseg segmentation algorithm on a clinical cohort./
/With respect to some regions, we currently prefer its results to the ones
generated by the standard freesurfer segmentation algorithm.
/
/As SAMSEG only provides volume calculation (please correct me if I am wrong)
and does not feature cortical thickness measurements,/
/I was wondering if the recon-all pipeline can be modified to utilize the
samseg segmentation instead, and if so, which script(s) or chain of commands would be a good starting point to implement this./
/Looking forward to your feedback,/
/Julian
/
Julian McGinnis
PhD Candidate
TUM-Neuroimaging Center, School of Medicine, Technical University of Munich,
Munich, Germany
Department of Computer Science, Technical University of Munich, Munich, Germany
Email:julian.mcgin...@tum.de
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