Which cortical thickness measure? The value in the stats file or the 
values in the map prior to voxel-wise analysis?


On 10/10/2014 03:57 AM, Adam, Ruth wrote:

Hi,

I would like to exclude areas which were incorrectly segmented and 
could not be corrected after editing and re-running recon-all from the 
cortical thickness measure.
Thank you again.

Best,
ruthi


On 09 Oct 2014, at 19:57, Douglas Greve <greve@nmr.mgh.harvard.edu 
<mailto:greve@nmr.mgh.harvard.edu>> wrote:

What analysis?

On 10/9/14 11:35 AM, Adam, Ruth wrote:

Hi all,

Would be great is someone can tell me how to exclude 
user-defined labels from the analysis.

As far as I understand after creating all labels, mris_label2annot 
with a custom colortable should be used.
-Is this correct or is there a more efficient way to exclude labels 
form analysis?
-How can the new annotation file be incorporated with old annotation 
files to mark what should be excluded/included in the analysis?
-Can a similar operation be done directly for labels created in 
Tkmedit and volumes?

Thank you very much  in advance!

Best,
ruthi


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