Hi FreeSurfer community, 

  I would like to run '-bedp' with TRACULA, to run the bedpostx option. I see from the ./subjID/scripts/trac-all.cmd file that the actual command issued was bedpostx_seychelles, which allows for the PBS queueing system running on seychelles and is used by the Martinos Center folks to parallelize computation. I have 2 questions regarding this modification: 

1 - Can I switch to strictly bedpostx? Is there a text file I can alter to reflect changes to the commands issued? I believe trac-all.cmd is actually created at runtime, not prior.

2 - I work at NIH and have the Biowulf cluster to work with. Can I parallelize bedpostx on Biowulf (which uses a  Altair's PBS Pro batching system) with TRACULA's trac-all -bedp command, or any of trac-all

Thank you for your attention!


Susie Kuo