what version of fs are you running?

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I tried both below and got the same error.

setenv TMPDIR $my_tmp_dir

setenv tmpdir $my_tmp_dir

Is doesn't seems like selxavg3-sess reads this env variable. Or am I missing something? 

On Mon, Jun 4, 2018 at 5:56 PM, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

set the TMPDIR env variable to point anywhere you want



On 06/04/2018 02:57 PM, Jiahe Zhang wrote:
>
>         External Email - Use Caution

>
> Dear Freesurfer experts,
>
> While running selxavg3-sess on a large functional scan (7 Tesla, 768
> time points), I got these errors
>
> gzip: stdout: No space left on device
> ERROR: /tmp/tmp8187256.nii, read in 1669519272 voxels, expected 3257077248
>
> It sounds like there wasn't enough space on /tmp for an intermediate
> file to be written. Is there any way I can override the default so the
> intermediate file gets written to a location that does have enough
> storage space?
>
> Thanks,
> Jiahe
>
>
>
> --
> Jiahe Zhang
> Ph.D. Candidate
> Department of Psychology
> Northeastern University
> 617-373-2649
>
>

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Jiahe Zhang

Ph.D. Candidate

Department of Psychology

Northeastern University

617-373-2649

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