Hi FreeSurfer experts,

I am repeatedly running into an autorecon3 error (see below). Any ideas how to fix this? It appears that the software is having an issue reading /surf/lh.sphere and immediately exits afterward.

Thank you,
Adam

 

Adam Mezher

Staff Research Associate II

Center for Imaging of Neurodegenerative Diseases

San Francisco VA Medical Center

4150 Clement St. (114M)

San Francisco, CA 94121

Tel: 415-221-4810 Ext. 4629

Fax: 415-668-2864

 



using smoothwm curvature for final alignment
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $
reading surface from ../surf/lh.sphere...
mris_register: could not read surface file ../surf/lh.sphere
ERROR: reading ../surf/lh.sphere
Read 0 bytes, expected 1
Linux aldebaran 2.6.18-194.17.4.el5 #1 SMP Mon Oct 25 15:50:53 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s PPMI_290_S_3829m12_i395612 exited with ERRORS at Wed Nov  6 15:57:07 PST 2013