Hello all<br><br>Below is my information:<br><br><span style="color: rgb(0, 0, 153);">rhinal</span><br style="color: rgb(0, 0, 153);"><span style="font-family: monospace; color: rgb(0, 0, 153);">
<br></span><span style="color: rgb(0, 0, 153);">cat $FREESURFER_HOME/build-stamp.txt</span><br style="color: rgb(0, 0, 153);"><pre><span style="color: rgb(0, 0, 153);">source /usr/local/freesurfer/nmr-dev-env</span><br style="color: rgb(0, 0, 153);">
<span style="color: rgb(0, 0, 153);">setenv SUBJECTS_DIR /space/rhinal/2/users/gopal/lynch_data</span><br style="color: rgb(0, 0, 153);"><br style="color: rgb(0, 0, 153);"><span style="color: rgb(0, 0, 153);">which recon-all
</span><br style="color: rgb(0, 0, 153);"><br style="color: rgb(0, 0, 153);"><span style="color: rgb(0, 0, 153);">cd /space/rhinal/2/users/gopal/lynch_data</span><br></pre><br>I am not having an error per se, but recon-all keeps crashing before it is complete.&nbsp; If i look at the files that were created in order of date modified, the last file created in the surf folder (before it crashed) is rh_defect labels.&nbsp; files such as 
rh.sphere and rh.thickness were not created (although the corresponding lh files were).&nbsp; Do I have to run the entire recon-all program again?&nbsp; Or can I just run recon-all -s lynch -autorecon3?&nbsp; I am just trying to figure out if there is a quicker way to create the remaining files other than running the entire recon-all process, which will take another 30 hrs.
<br><br>I appreciate any suggestions.<br><br>Thanks very much<br>Abi<br>