External Email - Use Caution        

I definitely wouldn’t… if anything, I would QC and leave aside subjects where the segmentation has failed.

Cheers,

/Eugenio

 

 

-- 

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com 

 

 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Caroline Chwiesko <cchwiesk@uci.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 26 July 2019 at 17:02
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Question regarding editing hippocampal subfield segmentation freesurfer 6.0

 

        External Email - Use Caution        

Hello Freesurfer experts,

 

I have a general question regarding the HIP subfield segmentation 6.0.

Is it in general still recommended to edit the resulting HIP segmentation?

 

I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? 

If editing is still recommended what file and what method should be used for HIP editing? 

I attached two images as an example, which I think could benefit from some editing. 

 

Thank you very much in advance!

 

Screen Shot 2019-07-23 at 12.54.41 PM.png

Screen Shot 2019-07-23 at 12.58.03 PM.png

 

On Tue, Jul 23, 2019 at 1:10 PM Caroline Chwiesko <cchwiesk@uci.edu> wrote:

Hello Freesurfer experts,

 

I have a general question regarding the HIP subfield segmentation 6.0.

Is it in general still recommended to edit the resulting HIP segmentation?

 

I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? 

If editing is still recommended what file and what method should be used for HIP editing? 

I attached two images as an example, which I think could benefit from some editing. 

 

Thank you very much in advance!

 

Screen Shot 2019-07-23 at 12.54.41 PM.png

Screen Shot 2019-07-23 at 12.58.03 PM.png