On 18. Mar 2019, at 21:16, Martin Reuter <mreuter@nmr.mgh.harvard.edu> wrote:

Hi Theo,

the file should be :

$SUBJECTS_DIR/qdec/.Qdecrc

it is important that it is at that location and should not have an extension (not .txt !)

Best, Martin

On 18. Mar 2019, at 16:16, AKUDJEDU, THEOPHILUS <T.AKUDJEDU1@nuigalway.ie> wrote:

        External Email - Use Caution        

Dear All,

I am running a longitudinal (2-time points) group cortical analysis in Freesurfer 5.3 with Qdec. After shrinking the longitudinal QDEC table into a cross-sectional form, I added a text file containing the lines

MEASURE1 = long.thickness-avg
MEASURE2 = long.thickness-rate
MEASURE3 = long.thickness-pc1
MEASURE4 = long.thickness-spc

in the qdec directory to guide qdec to know about the newly created files (e.g. lh.long.thickness-spc...). However, it doesn't seem to be recognizing/picking up the new files or not reading the text file named Qdecrc.txt (which has the lines above. 

Will be glad if you could offer any help. 

Thanks 

Theo

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer