Dear all,
I've the following error right after starting trac-all -bedp -c configuration_file:
Making bedpostx directory structure
Queuing preprocessing stages
[: 223: NONE: unexpected operator
[: 314: NONE: unexpected operator
[: 327: xbedpostx_pre: unexpected operator
[: 486: x: unexpected operator
[: 486: -le: argument expected
Queuing parallel processing stage
[: 223: NONE: unexpected operator
0 slices processed
[: 327: xbedpostx: unexpected operator
[: 486: x70: unexpected operator
Queuing post processing stage
[: 223: NONE: unexpected operator
[: 314: NONE: unexpected operator
[: 327: xbedpostx_post: unexpected operator
[: 486: x: unexpected operator
[: 486: -le: argument expected
From the created files it seems that the first error occurs at "preprocid=`${BPDIR}/fsl_sub_seychelles -T 60 -m a -N bedpostx_pre -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_preproc.sh ${subjdir}`"
Any idea how to fix this error?
Trac-all -prep finished without error.
I've Freesurfer 5.1.0, Ubuntu 11.04 and FSL 4.1.8 installed using Neurodebian and I don't use SGE.
I'd appreciate an early answer.
Thanks,
Gabor