Hi Karin,

This tutorial will explain how to find your dicom input file: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Practice

Best,

Emma

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Karin Westin <karin.westin85@gmail.com>
Sent: Wednesday, April 11, 2018 9:29:37 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] DICOM input to recon-all

Hi everybody!

I'm very new to freesurfer and I'm trying to perform a reconstruction using recon-all. My problem is I don't see how I can access a single file to input to recon-all. I've run dcmunpack -src <path to mri-file>
but the only output I get is

Found 2 unique series: 4 401
Subject (name of subject)
Date (date of examination)
Time 110000
Institution (place of acqusition)
4 3DBRAVO+Gd 3.344 8.724 13 0.9375 ROW 195.312 ./EE975AF8
401 refSAGBRAVO+gd 3.344 8.724 13 0.46875 unknown 195.312 ./EEF3A407

How do I access the actual files of these series?

Best,

Karin