Hi Saurabh,

On Mar 4, 2014, at 07:56 , Saurabh Thakur <srbhthkr@gmail.com> wrote:

> Hi Markus Gschwind,
>
> I am using Matlab  7.12.0.635 (R2011a),
>
> I am not able to read the dicom image neither brain.mgz file nor the surface file in matlab.
>
> I have added these file in matlab directory.
>
> Comment or error i m getting is :
>
> for example :
> >> load_dicom_fl(IM_0001)
> ??? Undefined function or variable 'IM_0001'.
>
> 2nd example :
> >> MRIread(brain.mgz,brainMRI.hdr)
> ??? Undefined variable "brain" or function "brain.mgz".
>

        You need to supply the full path to the volumes in a string, so assuming you called matlab from the same directory where brain.mgz is located, or used mat lab's "cd('/patrh/to/your/data')" to make sure you are there. Then simply calling "MRIread('brain.mgz');" should do the trick; note: only put the stuff between the double quotes into the matlab command window.

best
        Sebastian

> I looking forward to work on matlab along with freesurfer.
>
> Looking for your reply asap.
> Thanks for reply.
>
> cheers
> Saurabh Thakur,
>
>
>
>
>
>
> On Tue, Mar 4, 2014 at 12:17 PM, <markus.gschwind@gmail.com> wrote:
> Hi!
>
> Can you specify what happens when you try to read the files?
>
>
>
>
> On 4 mars 2014, at 06:44, Saurabh Thakur <srbhthkr@gmail.com> wrote:
>
> > Hello Freesurfer,
> >
> > I am trying to runs MRIread.m file in matlab.
> >
> > But it is not reading the brain.mgz or any other format.
> >
> > Can u help  in this regards.
> >
> > Thanks in advance,
> >
> > cheers
> > Saurabh Thakur,
> >
> >
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom it is
> > addressed. If you believe this e-mail was sent to you in error and the e-mail
> > contains patient information, please contact the Partners Compliance HelpLine at
> > http://www.partners.org/complianceline . If the e-mail was sent to you in error
> > but does not contain patient information, please contact the sender and properly
> > dispose of the e-mail.
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in error
> but does not contain patient information, please contact the sender and properly
> dispose of the e-mail.