I am finding strange loops in the pial surface of my subjects and I'm not sure how to fix them. They do not seem to be caused by problems in the brainmask.mgz - the wm surface looks fine - and they do no seem to be caused by problems in the wm.mgz. What is the best way to deal with them? I have attached a few tiff examples of these loops as visualized in the brainmask.mgz and accomanying saved points in the inflated surfaces so that you can see what I am referencing. Any advice you have would be most appreciated!
Best,
Laura.
-- Laura Tully Social Neuroscience & Psychopathology Harvard University
840 William James Hall 33 Kirkland St Cambridge, MA 02138 ltully@fas.harvard.edu --