Hi all,

I have a recon that looks like it ran (almost) to completion, but then threw a permissions error in the stdout and directed me to the log. I can't determine what the issue might have been. I've attached the .log file as well as .error and .done files. I'll also paste the end of the stdout below because for some reason the permissions error was not captured by the log file. I appreciate any insight anyone can give.

Best,

John

end of stdout:

tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied

setting seed for random number generator to 1234

total integrated curvature = 26.759*4pi (336.266) --> -26 handles

ICI = 173.9, FI = 1548.0, variation=24893.111

writing Gaussian curvature to ./rh.white.preaparc.K...done.

writing mean curvature to ./rh.white.preaparc.H...done.

@#@FSTIME  2022:02:17:09:34:06 mris_curvature N 4 e 1.41 S 0.03 U 1.30 P 94% M 157860 F 0 R 20801 W 0 c 20 w 53 I 0 O 2176 L 1.29 1.25 1.20

@#@FSLOADPOST 2022:02:17:09:34:07 mris_curvature N 4 1.29 1.25 1.20

Linux erso.nmr.mgh.harvard.edu 4.18.0-365.el8.x86_64 #1 SMP Thu Feb 10 16:11:23 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied

recon-all -s sub-LALM61_ses-LALM61 exited with ERRORS at Thu Feb 17 09:34:08 EST 2022

tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied

tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied

For more details, see the log file /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

BugReporting - Free Surfer Wiki top. Bug Reporting. Submitting a request for help . When submitting a request for help with your problems please be aware that the developers will try and repeat your ... surfer.nmr.mgh.harvard.edu

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