We are getting the error below for every subject when we run recon-all-clinical. It's only for the rh, not the lh. We are using Freesufer 7.4.1 with the synthseg python script.

Let me know if there is a fix/update/patch for this.

Thanks,

Melissa

ERROR: cannot find or read /usr/local/freesurfer/dev/average/colortable_BA.txt

ERROR: cannot find or read /usr/local/freesurfer/dev/average/colortable_BA.txt
computing statistics for each annotation in ./rh.BA_exvivo.annot.

reading volume /data/recon-all-clinical/3CAMC005746_125300857_20240220/mri/wm.mgz...

reading input surface /data/recon-all-clinical/3CAMC005746_125300857_20240220/surf/rh.white...
reading input pial surface /data/recon-all-clinical/3CAMC005746_125300857_20240220/surf/rh.pial...
reading input white surface /data/recon-all-clinical/3CAMC005746_125300857_20240220/surf/rh.white...
INFO: using TH3 volume calc
INFO: assuming MGZ format for volumes.
Using TH3 vertex volume calc
Total face volume 183858

Total vertex volume 183685 (mask=0)

error: No such file or directory

error: could not read annot file ./rh.BA_exvivo.annot

error: No such file or directory
error: mris_anatomical_stats: could not read annotation file ./rh.BA_exvivo.annot
computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot.
reading volume /data/recon-all-clinical/3CAMC005746_125300857_20240220/mri/wm.mgz...
reading input surface /data/recon-all-clinical/3CAMC005746_125300857_20240220/surf/rh.white...
reading input pial surface /data/recon-all-clinical/3CAMC005746_125300857_20240220/surf/rh.pial...
reading input white surface /data/recon-all-clinical/3CAMC005746_125300857_20240220/surf/rh.white...
INFO: using TH3 volume calc
INFO: assuming MGZ format for volumes.
Using TH3 vertex volume calc
Total face volume 183858
Total vertex volume 183685 (mask=0)
error: No such file or directory
error: could not read annot file ./rh.BA_exvivo.thresh.annot
error: No such file or directory
error: mris_anatomical_stats: could not read annotation file ./rh.BA_exvivo.thresh.annot
All done!

This electronic message is intended only for the use of the individual(s) and entity named as recipients in the message. If you are not an intended recipient of this message, please notify the sender immediately and delete the material from any computer. Do not deliver, distribute or copy this message, and do not disclose its contents or take any action in reliance on the information it contains. Thank you.