From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Alexopoulos, Dimitrios <dimitriosalexopoulos@wustl.edu>
Sent: Tuesday, March 13, 2018 1:06:25 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] running -hippo-subfields with both T1 and T2 using FS 6.0

I need a clarification with the command to run for generating the hippo subfields on 6.0 using both a T1 mprage and T2 space (both 1mm isotropic).

I'd like to run the entire recon-all -all surface and hippo subfields processing stream.

Would this be the correct command:

recon-all -s subject -i dicom.dcm -hippocampal-subfields-T1T2 T2.nii.gz T1T2 -all

Thanks.

Jim

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