---

From: Douglas N Greve <greve@nmr.mgh.harvard.edu>
To: raka maitra <rakamaitra@yahoo.com>
Cc: freesurfer_mailing_list <freesurfer@nmr.mgh.harvard.edu>
Sent: Mon, August 9, 2010 4:02:11 PM
Subject: Re: [Freesurfer] smoothed data stats

It should work. How are you smoothing the thickness file? You need to
smooth it in the native surface space.

doug

raka maitra wrote:
> Dear all
>
> I would like to look at the change in the average values of thickness
> after smoothing.
> But mris_anatomical_stats does not work on the smoothed files as the
> no of vertices of the annot files and the smoothed files are very
> different.
>
> I tried recreating annot files using the flag -surf pial and the
> aparc+aseg.mgz but I got following error message:
> could not open translation file
> /Applications/freesurfer/cma_parcellation_colors.txt
> could not open translation file
> /Applications/freesurfer/Simple_surface_labels2002.txt
>
> Your help would be appreciated.
> Thanks in advance
> Raka
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.